RNA id: TCONS_00006136


Basic Information

Item Value
RNA id TCONS_00006136
length 2408
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id XLOC_003090
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44974236 ~ 44976643 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctaagcTTGGtgtaaacagcagacggcgctctaggcttggtgtaaacagcagacggcactctaggctagttttaaacagcagacggcgctctaggctagttttaaacagcagacggcgctctaggctagttttaaacagcagacggcgctctaggctagttttaaacagcagacggcgctctaggctagttttaaacagcagacggcgctctaggctagttttaaacagcagacggcgctctaggctagtgtttaacagcagacggcactctaggctagtctttaacagcagacggcgctctaggctagtgtttaacagcagacggcactctaggctagtctttaacagcagacggcgctctaggctagttttaaacagcagacggcgctctaggctagttttaaacagcagacggcgctctaggctagttttaaacagcagacggcgctctaggcttgtgCTTAACAGCTGTAGCTCTAGGGCACTAAAGGCTAGTGTTCAACAGATGGCATTCTAGGtttgtttttaccagcagatggctctattttttaacagcaaactgctctatgctagtttttaacagcagacggcactttaggctagtttttaacggcAGACGGCACTTTGGGCTAGTTTTTAGGACACTAGACTAGTCATGTACTGTAAGTGGTCAAATGTACTTGCTTTCTTAACTGTACTGATGATTTCATAAGAAATAATTGATTTATTCCTGTTTAATTATTGTACGATAATGCATTATTTTCCAATAATTCAACATCCTGGAGTGGATTATTGCgattctcctctggcctctgcTAAAtccactgttcagatgttgtaaTTGAGACCTTTGTCTGGTTTCTAGTGTCCTCTAAAGCCTTCTGCTGTGTTTTTTGAAGTGAtgtttgactgttgtagctgtgaaatcaCTGAAATCATGCAGTGTAGTGATAGGCAGCTGTAAggctgccggaactactttagctgtgtgtttatctcaGTATAATGTCACACtttagaatgctcatcagccaatcagaatccagcattcagcagacCTGTAGTATATGGTATACAGCTCGATCTGTTGGTTATAACTAAGCTCAGAATCGCGGTCATTGAGAGAAGCGTGTCGCCGCTGCAGCTGTTAGCGTTTCTCCACCTGTTCTGCTAAACATTTGCCGCTCGGCTAAACTGAGCGTGTGTTGGGGACTCCAGGGAGGCTGAGCTGCTCTCTGAACAGTTTTCAGatcatgcatgtgtgtttgtgtgttcattctGATTGTACGAGTCTTCAAGACTAACACTGAATGTGTCTCAGTGAAGAGTGTTTGTTTGAGAATTGCAAATGACCGACAAAATAAGCCATTTCGACATGTTTCTCTCTTCACTTTGAGGTTTGCACATGGGTCAAAGATGGAAACAGGGTTTTTCCAGCATCaaaatgtgattatttatttatttctaagcAGAATTGTCATTACTAGTCACTGATTGTAACAATATGTGACCCAACACACTGTATGAGTCAAAAATtattagattttgttttatttttatgtcaaaAATCATTAGATTGTTAAGTAATTTTCCATGAAGTACActttctactgtaaatatatcaaaatgtcatttttgattagtaatatgcattgctaaataCTTAATTTGCACAACTTTAAAGGTtactttctcaatatttagattgttttttaatataactCTCAGATTACAGATTAATAATATCTCTGACAAATATTGTCAATAACAAACCATCAATGGAAAgcctatttactttatttaacgGTGTTTGCGATCACATATGTTAATAAAGGAATCATCTGATGACATATTAAATTAACATAATTTACAGGTCACCAAAAACCTTGAATTAAATTGTCCTATTAAATGCAATCAGATTGATCTGATcacttattatttaatatattttagtaagtccagctctgttaaacaaatataatactgaATTGCTGATTTCATGCACACGTTATCACAAAACACAGCCATTTCATGTATGTCAAGTGTGTGAAATCACTTTAGTTTATTGTATTTGATGCAGAATCCATCTTTGACCCTCCTGCATTAAATTCCTCTCGACTGCTAAACGTCAAGTAAAATCGCAGCACTTTTATTTCATTTCTATCCATCAAACCTATTAAATGGGGCACAAATCTCTTGCAAAGCACCAGAAATGGACTTTCTTTCGACTGAACTTGGCTGTGTTTATTTCAGAtgcattatttatatacatatacagttgaagacattAGCGACTAACGTAATTATTGGTCGGATATTTCCCAAAttacgtttaacagagcagaaTTTCATGTTAGATTTAGCATTTGGgggaaaaaagatttatttatttcaggttTGATTggaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0034220 ion transmembrane transport biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0007275 multicellular organism development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005646 lncRNA downstream 472517 44493919 ~ 44501719 (-) False XLOC_003084
TCONS_00005645 lncRNA downstream 472517 44493919 ~ 44501719 (-) True XLOC_003084
TCONS_00006135 lncRNA downstream 586434 44380918 ~ 44387802 (-) True XLOC_003080
TCONS_00005636 lncRNA downstream 698351 44268481 ~ 44275885 (-) True XLOC_003076
TCONS_00005635 lncRNA downstream 721132 44242236 ~ 44253104 (-) True XLOC_003075
TCONS_00006137 lncRNA upstream 70586 45047229 ~ 45051485 (-) False XLOC_003094
TCONS_00006138 lncRNA upstream 71872 45048515 ~ 45051538 (-) True XLOC_003094
TCONS_00006139 lncRNA upstream 378981 45355624 ~ 45357482 (-) True XLOC_003097
TCONS_00005652 mRNA downstream 49947 44917351 ~ 44924289 (-) True XLOC_003089
TCONS_00005651 mRNA downstream 185682 44769050 ~ 44788554 (-) True XLOC_003088
TCONS_00005650 mRNA downstream 413934 44553709 ~ 44560302 (-) True XLOC_003087
TCONS_00005649 mRNA downstream 414071 44552548 ~ 44560165 (-) False XLOC_003087
TCONS_00005648 mRNA downstream 457050 44513231 ~ 44517186 (-) True XLOC_003086
TCONS_00005653 mRNA upstream 2890 44979533 ~ 44981295 (-) True XLOC_003091
TCONS_00005654 mRNA upstream 20419 44997062 ~ 45002196 (-) True XLOC_003092
TCONS_00005655 mRNA upstream 38582 45015225 ~ 45029041 (-) True XLOC_003093
TCONS_00005656 mRNA upstream 76934 45053577 ~ 45058886 (-) True XLOC_003095
TCONS_00005657 mRNA upstream 228764 45205407 ~ 45210184 (-) False XLOC_003096
TCONS_00005629 other downstream 956571 44008209 ~ 44017665 (-) False XLOC_003072
TCONS_00005631 other downstream 958497 44009952 ~ 44015739 (-) True XLOC_003072
TCONS_00005619 other downstream 1141568 43831882 ~ 43832668 (-) True XLOC_003068
TCONS_00005616 other downstream 1214704 43718760 ~ 43759532 (-) False XLOC_003066
TCONS_00005617 other downstream 1214757 43735286 ~ 43759479 (-) True XLOC_003066

Expression Profile

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