RNA id: TCONS_00062287


Basic Information

Item Value
RNA id TCONS_00062287
length 8172
RNA type mRNA
GC content 0.55
exon number 53
gene id XLOC_031796
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4255319 ~ 4365331 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCATCGACCGAGAGGCTGTATGAGGTTTGGATGCTGTACTGCAGTAAGAAGGACCCAGACTACCTGAAGCTCTGGTTGGAGATTTTCATCGGCTCCTACGAGAGATGTCTGGATGTGGATTTCGAGAAACCGCCAAGCAGGTCAGAGGAGACGCCGCCGGTCATGACGCTGCTGCCCGATAACATCCTGCAGGTGTTGCGTCTGCAGCTCCTCCAGTGTGTGCAGAAAGCATCTGAAGGCCTGGAGCCCGAGCAGCAGACGCTGGCACTCCTGCTCCTCAAGTTTCTCATCGTCATCTGCAGGAACCTGTCTAATGTGGAAGAGATCGGCGCCTGCTCCTACATAAACCACATCATCAACATGACGACTCTTTACATCCAGCAGCTGAAGAGTAAGACAAAAGAGAAGGAGCTGGCCGATCAGACACAAGCAGAAGAGTTTGTCCGTCACGCTCTGGCCTTCTGCGAGAGTCTGTATGATCCCTACCACAACTGGAGGCATCGCATTCATGGACAGCAGTTAAGTACTGCGGAAAGAAGCAGACAGAAGTTTAAAGCCGCGGCGCTCACTGTAGAGTTTGTGCCCTTCTTCTACCAATGTTTTCAGGAGAGCGAGCATCTGAAAGACAGTCTTAAATGTTGCCTTTTGCATCTGTTTGGAGCCATCGTCGCGGGTGGACAGCGCAATGCTCTGCTGGCCATCTCTCCGGCCACCATGGAGGTGCTGATGGGCGTATTGGGAGCCGGCGAGTGTCTGAGCGGTGGTGGAGATGGAGAGGACTGGGACAGTGAGGCTCCGGACCGCAAGGCTCTGTTGACTCTGGGCTGTTTGAGGGAGGTTGTGCACCGACTCCTGGCCAGCAGCTCTGACCAGAGACAGGTGGAGATCAGCTCTGTGCTGGAGAGCTACTTTAAACTGCTGAACTCTGACCCCGCTGCTGCTGCACAGGTCAAAGGTCGACCGGCACCACCACGCTCACGCCACTGGGAGAGCCGCTTTGTGGCGTTACAAGTCAACATGCTCGAAACCATTCAGGACATGTTTGAGTGCAGTGACCGGCCCGTTCTGCAGGCCATCTTCCTCAACAGTAACTGCTTCGAGCATCTGACCCGACTCCTGCAGAACAGTAAGCTGGTTAACGCTAGGTGCACAACTGCAGACAAGGACCAGAAAGATTTAACCAACAGGTTACTGACAGGAGAGAGTGAGATTCAGGTGTTCCAAGGGAGGCTGGACTCTCTTGCCGTGGCGACGATCAAAACGCTCACGACGGTGATGCTCAAGTCACCTGCTGCAAAGGAAGTGTTTAAGGAGCGAATTGGCTACACTCACTTGTATGAGGTGCTGGTGTCGCTGGGTCAACCATCCAGACACCTGTTGAAGGAACTTATGAACATGGCTGTTGAAGGAGAGCATTCGTCTGTCGGCCTGTTGGGCATCAGTAACGTGGATCCTCTGCTGCTCCTGATCCATTGGCTCCCAGAGCTGGACTCTGCCGAGCTGCAGATCTTCACCGCCGACTGGCTCCGGCGTATCTGCGGTCTGAACCGGCGCACGCGAGCCACCTGCGTCAACTCCTGCATGACTGCTGTGGTGCTGTCGGCTCTGGAGAGACACCAGCGGCTGCACCGGGCCTGTGCCGAGAGTCTGGTGGCTCTGCTGGGCTCTCTGGGCAGTCAGTCGCTCAGTTCCTCCGAGCTCCAGCTTCTTCTGAGGCTCCTGCGTCAGGACGAGCCGGGCCGCGCTCACCCGTATGTGGGACCGGTGCTGTGTTCACTGCTGGGGATGGTGCGCAAACAGGGTTTGGAAAGTGCCATGCAGTATTTTGATCTGTCACCACCCATGGCTGGCATCGCGGTGCCTACTATCCTCCGCTGGCCAGGCTCCGCCTTCAGCTTTTTTGCTTGGCTGTCATTGGACCAAGATCAGCTGGGCCCGCCCAGCAAAGGAGAAAAGAGGAAGCAGCTGTATAGTTTTTTCACCCCGGGCGGTACCGGGTTTGAGGCCTTCATCAGTTCAGCCGGAGTTCTTGTGGTTGCTGTGTGCACCAAGAAAGAATACGTCACCGTCATGCTGCCTGACTACTGCTTCTGTGATTCGCTCTGGCACAGTATCGGTGTAGTTCATGTGCCAGGAAAGAGGCCGTTTGGCCAGAGTCTGGTCTATATCTTTGTGGACGGACAGCAGAAACTATCAGCACCTCTAAAATACCCAACCATGACTGAGGCCTTCACGTCATGCTGTATCGGTTCAGCGGGTCACCGCACCACCACCCCTCCTCCATCTCAGATCCCCGATCCTCCGTTTTCCGGAGCTCATCCATCCGGACGCTCATCCTTCGGCACCATTCTCCCGGGATGGGGTGGACTGCTGGGCACCAAACCCGAGTCGGTCACCAAACTGATCTCTGCCGGGACGCAGGACAGCGAGTGGGGCAGTCCCACATCACTGCAGGGCCAGCTGGGCAGTGTTATGGTCTTCCACGAGCCGCTGCAGGCCACTCATGTCAAAGCCCTCTGTAGCGCAGGACCAAACTGCATCTCGGCCTTCAGGAGTCAGGAGGCGGAGCTGGGAGAGCTGGCACCCAAACTCCTGCTGCACTACTCTCCAAAGGCGTGCAGGAACCCCATTTGTCTGGATTTGTCCCCTAATTTGCTGCACGGTCGCCTGACGGGAAATAAAGTGGTCAACTGGGATATTAAAgacATGATTAACTGTGTTGGAGGGATCCCTGTGCTTCTTCCAGTCCTGGAGCAGTTGACCTTATTAAACCCAGATTCAAATCCTGTGGAGCCGTCAGGGTCGGAGTTCATCAGCCCTGACTCCGCTACACCCGCTGATGGAGACTGGGTCATACTGCCCTCCAACAGGGCCTCAGAGGCCAGACTGGAGAAGAATCTGGTGGCGACGTTCCTGCTGGTGATCAAGCATTTCCTGCAGAGACACCCGATAAACCAGGAGACTCTCCTGCACTCGCATGGTGTGGCCACATTAGGGGCGCTGCTGCAGAAGctgccGGCGTTCCTGGTGGACGTGAGCGTGTTGGTGGCGGTTCAGCTGCTGATTGAGCAGATGACATATGAGAAGAACACTCAGCTCCTGCTGCAGCTCCACACACACCTGCTCTTCAACTTCAACATCTGGAACCAGGGAGATTTTCCCCTTCGCATCGGCCACATCCAGTACACCTCCACCGTCATCAAAGACAGCAGGAAGCAGTTCAGGAAGAAATACGGAGTGCAGTTCCTCCTGGACACAATTCGCCTGCACTATGGTTCAGGAAGTAAAGATGCAGATCTGAGTGAGGACGACATCAAGACAATCAGAGCTTCCCTTTACGGCCTCCTCAAGTATTACATCAGCAAGGGAACCACTCAAGAGGAGATCCAGAGCATTCTGGGATACATTGCTGCTATTGGAGATGAAGAACAGtTGTGTGGGGTCTTGGATCTGCTGTTGACTCTGCTTCAGACCAGTGCAGCGCGGGATCAGCTCTTTCTGCTGCTGTTCGAACCCGGAGCCGCAGAGTCCTGCTACGCTCTTCTGCTCAGCAACAAACACTCAGACCGCCTGCGCGAGCTCATCTTCAAGTTATTTGAGCGGATGCTGAAGTGTGATCGTGTGTATGAGAAGAGCAAGCAGCGGCTGCGATTGAGGGATGTGGGATATTCAGGCCTCAGTCTGCTGTTCTCCGACCTGCACCTCACCTCCACCCTCATCAAGTGCCTCCTTCACCAAGTGCTGTCTACTGATACTGTGGTGAACTATAAAGATCTGATGGCTGTGGTTCAGCTCACACATAAAGCCGGGCCCAGTGTTCGCCTGACTGTATGCAAGAGGCTGTACACACTGCTTCAGTCTCAGCCGGACGCAGCGCTGCAGAtctccaagcaggtgtgttggcAGGGAACTCTGATGCGGCTGTTTGTCCGGAGCCCCGGGAGTGACGGAGGTTCAGGTCGTGGTGACGCTGCCAGTCTGGGGAGTTTGGAACTGAGCCGCAGCAGCGGAGGAAACCGCCTGGAGCCGCCTCTGGAGCGCAGGCCTCTGGGAGACAGCGTAAACCGGCTGAACGAAGAGCGGGACAGTGTTTCAGACAGCAGGTCTATCGACAGCCTGGATAACGGAGAGCTCATGTCTCTGTCTGACACGCCGGTGGAAGCACACACACCTAAAACCTGGCCAGGGAAAGCAGGAGTGCTGAGTCTGGATCTGTCCCAGCTGGATCGCGGGGATAGCGGCAGTCAGACTCCTGGCAGTATGCAGAGCACGCCATCGCCTCTGGAGAACGCCAAACCGTTCCCTGGAGCTTCCTCTCTCAACGATGACAACTTCCTGTTCAGTGACAACGTGTCCCTGGGGGAGTCGTTTAACAGCGAGcgCACAGAGGAGGAGTTGTCGCGTGTCCTGCTGGAGGTGGTCTTGTGTGTGATGTGGAGAGGGGTGGAGGGCTCTGATGACTCCGCCTGGCTGGACAGAGGACAAGTTTTCTCCGCCCTCACCAAACTGGGCACTGCCAATGAGCTGCTGCTGCCAGTCGACCACATCAAGCTCAGtctgaTGGAGAGGATGCTGGAGTGGGCTGTGACGGATAACCGTGAGGCGTCGGCGGTCACCCTGCCACAGCACACAGAAAACGCGGTGCGCCTCCTGCATGTGGTGCAGGATTTCCTGCAGGCGGAGGGTCTGGTGAATCCGGCTCTGTGGACGGAGAAGCTTCTGGAGGAGACGGTGACCCTGATGGACGGGCTGATGGTGTGGTACGCATCCGGCACACAGTGGCTGCAGCTCTCTCAGGTGGGGCTGCGGCTGCTGCTCGGCTTCATGGCGCAGGAAGACCCACAGGTGTGTGCTATGGCCACAGCCAAGCTGAACGGCATCCTGCAGACGAAAACGGTCAACTCTCAGGACGAGGCCTGTTATCTCCTTGGCCGTGTGGAGGGAATTCTGCGGCGTTCACTGAGCGAGGAGCGGATCGAGGACACGTACTCGTTTCTAGTGCCTCTCCTGCGAACTCTCCTGTCCAAAATCCACAAGCTGCTGTACATGGAGCTGCATCTGCCGTCCCTCCCCAACACTAACGGCAGCCCGTCCTTCTTCGAGGATTTCCAGCAGTACGTCACTTCACCCGAGTGGAGGGTCTATCTGGATAAATATATCATCCCCTACATGAAGCAGTATGAGATTGAGACGTTCAGTCAGGGTCATGAAAACATGGCTCTCTACTGGAAGGACTGTTATGAAGCCTTCATGCTCAATCTGCACCGCCGGGACCGAGACCGAGGAGAGAGCAAGATACGCTTTCAGGAGCAGTTTGTGGAGCCGTTCAGCCGTCGAGGGCGTCAGGAGAACCTGCGGTACAACAGCATGCTGAAGCAGATGCACACACAGAACAGCGGCGTCCTCAGACAGTGGAGAGCGGCGCGCAGAGGACTCTTCTGTGAGAGAGGACCATGGGTGGACAAGCAGCTCAAGGACATACACTGGAAGCTCTCTAGTGCTGAAAACTACTCCCGCATGCGACTCAAACTGGTGCGCAATTACAACTTTGACACCCACAGGGAAGCCAGTGCCCTGAGAGACAACCTAGGTGTGCAGCACCAGCAGGTGAACGCAGAGTCGCTGTTATTAGAGGCTGTGAAGCAGGTGAAGGTCAGTGATCTGGAGGACGACATTCTGGAGCTCCTGGAGGAGGATCCTGCATCAGCCAATCAGGCTGATTCAGAAGAGGCGGGTCAGAAGGAGAAGCTGGTGATCTCTGAGGACTGTGAACTGGTGACGGTGGTGGATGTTTATCCTGGTCGACTGGAGCTCACAACTCAACACATCTACTTCTACGACAGCAGCGCAGAGAAAGAGGAAGgtGTCGGTCAGGACTTTAAATGGCCTCTGTCTCAGATCCGAGAGATTCACCTGCGCAGGTACAACCTCCGCCGCTCGGCTCTGGAGATCTTCCTCATCGACCAAACCAACTACTTCCTCAACTTCAAGAAGGAGGTGCGTAATACAGTGTACAGCAGGATGCTGCTTCTGCGTTCTCTGTCTCTTCATGCCACTCACTCGCCGCAGGAGCTGCTCAAATCCTCTGGACTCACACAGAAATGGGTGAACAGGGAGATCTCCAACTTCGACTACCTGATGCAGCTGAACACCATCGCGGGGAGGACGTATAATGACCTGGCTCAGTATCCTGTGTTCCCCTGGATCTTGTCAGATTATACCTCAGAGGAGCTGGATCTGTCTGATCCGCGGGTCTTCAGAGATCTGTCCAAACCTGTGGCCGTGCAGAACGAGAGAAACGCCAAAGCCGTCAGAGAGAAATATGAGAGCTTTGAAGACCCCACGGGCACCATAGACCGCTTCCACTACGGCACACACTACTCGAACGCTGCTGGAGTCATGCATTACCTCATCAGAGTCGAACCCTTCACATCCCTGCACATCCAGCTGCAGAGCGGAAGGTTTGACTGTGCTGATCGTCAGTTTCACTCCATTCCGGCTACCTGGCAGACACTAATGGACAATCCCAATGATGTCAAAGAGCTCATCCCAGAGTTCTTCTACTTCCCAGAGTTCTTGGAGAATCAGAACGGATTTGACCTGGGCCGGTTGCAGATCTCTAAAGAGAGGGTAAATGATGTCATCCTGCCTAAATGGGCCAAATCTCCTGAGGATTTCATCTACAAGCATCGCAAAGCCCTGgaatCAGAGTTTGTGTCGGCTCATCTGCATGAGTGGATCGATCTGATCTTCGGTTATAAACAGCGGGGCCCGGCGGCAGTGGAGGCTCTTAATGTCTTCTACTACTGCACATATGAAGGGGCTGTTGATCTGGATGCCATCACAGATGAGAAGGAGAGGAAAGCTGTAGAAGGCATGATCAGTAACTTCGGACAGACGCCGTGCCAATTACTGAAGGATCCTCATCCCGTACGTCTGTCTCTGGAGGAGCTGGAGAAGAGGAGAACTCGTCTGGACTCCTGTCCTCTCAACATCTTTGAGCAGCTCACTGAACTCAAGTCCTTCTTCATTGAGGGCATCAGTGATAACGTGCCGCTGGTTAAAGCTGTGGTCCCGAAGAACCAATCACATTCGTTCATCTCGCAGGGAAGTCCAGACGCTCTGGTAACTCTGAGTCAGAATTGTTTGATGGGAACACATGGCTGGCTGCCGTATGACAAGAACATCTCCAACTACTTCACCTTCATCAAAGACCCCACCGTGACCAGTCCAAAgaCTCAGAGGTTTCTGTCAGGGCCGTTTTCTCCCGGGGTGGATGTCACAGCTCATCTGTTTGTTGTGTCTCATGATGGGAAGCTGCTGTTCAGTGGAGGCCACTGGGACAACAGTCTGAGGGTCACGTCTCTCGTCAAGGGCAAAACTGTGGGGCAACACATCCGCCACATGGACATCGTAACATGTCTGGCCACAGATCACTTCGGGATTCACCTGATCTCAGGTTCTAGAGACACCACCTGTATGGTGTGGCAGGTGCTACAGCAGGGTGGCGCCCCGGTGGGTTTGTCCCATAAGCCTGTGCAGGTGTTGTACGGACACACAGATGAAGTTGTGAGCGTGTCCATCAGTACAGAGCTGGACATGGCGGTCTCTGGATCACGGGATGGAACGGTGATCATTCACACTGTCCGGAGGGGTCAGTACATGCGCTCGCTACGGCCGCCCTGTGAGAGCTCTCTCCCCCTGTCCATCATGCACCTGGCTGTGTCCTGGGAGGGACATCTAGTGGTGCACACCTGCATCGAGGGCAAAGCTACACTGAAGgataaGAACGCTCTGCACCTGTACTCTGTGAACGGAAAGCACCTGTGCAGCTCTTCTCTGAAGGAGCAGGTGACGGACATGTGTGTTTCAGGAGAGCATGTGGTCATCGGCAGCGAGCAGGGCTTTCTCTCCGTCAGAGATCTCTACAGCCTGAGTCTGTGTGTGTCACCGATGGCCATGCGGGTGCCCATTCGCTGCGTCTCTGTGACCAAGGAGCAGTCTCACGTGCTTGTGGGACTGGAGGACGGCAAGCTGATCGTGGTGGGCGTCGGGAAACCAGCGGAGATGCGTTCTGGCCAGATTACCAGGAAGCTCTGGGGCTCCAGTAAACGTCTCACTCAGATCTCGTCTGGAGAAACAGAGTATCACACCCAAGAGCAACCCTGA

Function

GO:

id name namespace
GO:0008104 protein localization biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-544 Predicted to enable protein kinase binding activity. Predicted to be involved in protein localization. Predicted to be active in cytosol and membrane. Orthologous to human NBEAL1 (neurobeachin like 1).

Ensembl:

ensembl_id ENSDART00000170351

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062279 lncRNA upstream 250863 4001317 ~ 4004456 (+) False XLOC_031792
TCONS_00064799 lncRNA upstream 250863 4001690 ~ 4004456 (+) True XLOC_031792
TCONS_00064798 lncRNA upstream 376104 3877672 ~ 3879215 (+) True XLOC_031790
TCONS_00064797 lncRNA upstream 405077 3827777 ~ 3850242 (+) False XLOC_031788
TCONS_00062270 lncRNA upstream 429194 3816049 ~ 3826125 (+) True XLOC_031787
TCONS_00064800 lncRNA downstream 153078 4518158 ~ 4520247 (+) True XLOC_031798
TCONS_00064600 lncRNA downstream 833189 5198269 ~ 5399444 (+) True XLOC_031802
TCONS_00064801 lncRNA downstream 1573385 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00064802 lncRNA downstream 1573385 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00062298 lncRNA downstream 1573397 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00062286 mRNA upstream 5165 4229360 ~ 4250154 (+) False XLOC_031795
TCONS_00062285 mRNA upstream 5165 4229360 ~ 4250154 (+) True XLOC_031795
TCONS_00062284 mRNA upstream 78478 4160579 ~ 4176841 (+) False XLOC_031794
TCONS_00062283 mRNA upstream 78478 4160579 ~ 4176841 (+) False XLOC_031794
TCONS_00062282 mRNA upstream 78478 4160579 ~ 4176841 (+) True XLOC_031794
TCONS_00062289 mRNA downstream 5855 4370935 ~ 4403253 (+) False XLOC_031797
TCONS_00062290 mRNA downstream 6057 4371137 ~ 4401247 (+) False XLOC_031797
TCONS_00062291 mRNA downstream 22070 4387150 ~ 4401245 (+) True XLOC_031797
TCONS_00062292 mRNA downstream 163551 4528631 ~ 4536338 (+) True XLOC_031799
TCONS_00062293 mRNA downstream 174873 4539953 ~ 4543005 (+) True XLOC_031800
TCONS_00062276 other upstream 405077 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 417091 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062248 other upstream 1005849 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062246 other upstream 1089597 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062191 other upstream 4150597 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062297 other downstream 1319101 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062300 other downstream 1850714 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062305 other downstream 1906787 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062321 other downstream 2466966 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 2514847 6879927 ~ 6880049 (+) True XLOC_031817

Expression Profile

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