RNA id: TCONS_00062289


Basic Information

Item Value
RNA id TCONS_00062289
length 6234
RNA type mRNA
GC content 0.48
exon number 22
gene id XLOC_031797
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4370935 ~ 4403253 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGACCCTAAACACACaatcatattaatttaaaaacataaattattgtTGTACATTGTCACAAAAATTGATGCTAATATacgcagctgtatcccatctagactggAAGCGGCCGTGTGGTGTGCTGTTCTGTTCTCGCGAGATCTACCCGCGAGAGTAAACAGTCGCCATTTCTCGAAAGTAAGAAAGAGCAGAAAGTGTGGCGGACAGTTCGTTCACATCCACACAGAAACCAACTCGGAAAACTCCCGAATTACAGACCGCATCTAAGCCCCCTGTGCCCGGCTGTCTTCTCCGGCTGGTCTGCAGTTACATGTGATTTTCCAGTGGGAGTTTATGAGGGCGGTGAGTGATTGAGGCCTGACAGTACATTACATGCACACTGCATCCTGAGCAGACTGTAAACCATAGAGGTCTGCCTGACTGTAAGCTCATTGTTTTGGTGACTCTCACAGGAGCTAAAGACTGCAGAATAAACAGCTCTCCCCTGAAAAATGATCATTGAAAACCTCGAGGCCTTGAAGACGTGGCTCTCGAAGACTCTTGAACCCATTTGCGATGCCGATCCTTCTGCCCTTGCGAAGTATGTAGTGGCCTTGGTGAAGAAAGACAAATCCGAGAAGGAGCTGAAAGCACTATGCATTGACCAGTTGGATGTATTCCTCCAGAAAGagaCGCAGACGTTTGTGGATAAACTTTTTGAAGCTGTGAATGCAAAGAGTTACCTACCTCAACCTGAGCAGCCGACTCCTGCGAGCAGACCTGAAACTCACCAGCGCACAGAGAAAGATGAAGCAAAGAGAGAGGAGCCGCCTAGCCGAGATGAGGACCGGGAAAAGAAATTCTCCAGGAGAATAAACCACAGTCCTCCATCTAGCTCCAGATACAGCCGAGACAGCAGGAGAGTAGATGACCGCAAGAAAGATGATCGCTCCAGGAAACGAGAGTACGATCGTAATCCACCTAGAAGAGACTCTTACAGGGAACGCTACAACCGCAGGAGGGAGCGCAGCCGCAGTTACAGTCGCAGCCGTAGCCGCAGCTGGAGTAAAGACCGCACTCGAGACCGAGACAGAGAGCGGGACAGAGACCGAGACCGCAGCAGATCACGATCTCGCACACGCAGTCGCTCAAGAAGCAGAAGTAGAGAGCGAGATTCTGGAAAGCCGAAATACGAGCACAGTCGGCCAGAACGTCCAGAGGGAGCAACCACTGATGGCTACACCGCCGCTCCTCTCCCTCCTGTAAACTCTTCGGCCCATTTCCCAGTACCCACCCTCAGTAGCACCATCACCGTCATCGCCCCCACACACCATGGGAACAACACCACTGAGAGCTGGTCTGAATTCCCGCAGGACCACACACCCTTCGGCAGAGGCGGCCCACCGAGGAAACGCTGCCGGGACTATGATGAGAAAGGCTTCTGCATGCGAGGAGACATGTGTCCTTTTGATCATGGCAGTGATCCAGTGGTGGTGGAGGATGTTAATCTTCCCAGCATCCTCCCTTTCCAGCCTCCGCCTCTTCCTGGAGTGGACGGTCCTCCGCCGCCGGGTCTGCCGCCACCTCATGCACTCCTAACTCCACCAGTCAACCTCAGACCACCCGTGCCCCCACCGGGCACCATGCCTCCCAGCCTACCCCCTGTAGCAGgtcctcctcctcctcttcctgctCTTCAGCCGTCTGGAATGGACGGTCCTCCAAACTCCATCACTAGTTCCGTGCCCACTATAGTCACGTCGGGCATCCGGCCCCCCATGACCCAGCCTCCACCCCCACTGTTCACGTCAGATCCATTTGAGCCAGATGTGTATAATCCTGAAGCCCCCAGCATGACCTCACGACCCATGTACAGACACAGAGTCAACGCTCAGCGGCCCAATCTGATTGGTTTGACCATGGCAGAGATGGATCTTCCCCCTAGAGAGAAAATGTCAAACAGCAACAATGCTCGGATAGTTTTAGAGTCTGACTCCAGGAAGAGAGGAGCAGGTCTGCATGATTTAGCGATTCCTCCAAAGAAACCCTGGTTTGACAAACCGAACTTCAACAAACCCAATCACCACGGCTTTCACAGAAAAGTGCCCTTCCCTTTAGCAAACACCAAATTAGCCATCGGGCAGATTCCTCCAGAGCTCAACAACATCAGCAAACTGAACCAACACTTCAGCAAATTTGGCACCATCGTCAACTTGCAGgTGGCGTATAATAATGACCCAGAGGGGGCGCTGATCCAGTTTGCCACCCCCGAAGAAGCCAGACGTGCCATTCAGAGCACAGAGGCTGTGCTGAACAACCGATTCATCAGAGTAAACTGGCATAGAGAGGACACGGTGGAGCACATGCACCCCAAACCACATCCGAGTGTTCAGCCTGCCCAGGAGCCTGCAGTGACCGCACTGAAGCAGTCAGTGAAAGACCGGCTTGGACCCCTGCCCACCCCTCACCCTGAACCCACACCGGCCCCCAGCGGCCCTCCACAGAACACACTCAAGGCCTCAGTAAAGGAGCGTCTGGGCTTCTCGAAACCGCCTGGCCTTGGAACAAAgGTCTTATCAACATCTACTGGTTTGACGAAGACTGTTTATAACCCAGCTGCTCTGAAAGCTGGCCAGAAGGGGGCGCCATTTAGTGCCAGTGTCAGTGCAGAAGATGCCCTGAAAAGGAAACAGGAGGCAATGAAGCTTCAGCAGGACGTCAGGAAAAAGAAACAGGAGATTTTGGAGAAGCACATTCAGACTCAGAAGCTGTTGATATCAAGGCTAGAGAAGAACAAGTCCATGAAGGCGGAGGATAAAGCTCAGATCATGCAGACGCTCACCAGCCTCACCAACAGCATCACCAAACTCCAGGAGGAGATAAAGGGGCTGTCCAGTGCAAATGCCCTCAGGACCACGGTTAAGAGCAAAGCCCAGGCCCAGAAGGAGCTCCTGGACACAGAGTTGGATCTTTATAAGAAAATGCAGGCAGGAGAAGACACTGCTGAACTCAAGATCAAATATACACAACTGCAGTTAGAGGCTGCCAAAagggggcttctgaccccaggaCGTGGGAGGGGGGCCCACAGCAGGGGTCGAGGGGCCCTGAGGAGCCGCGGCCGAGGGATTCGAGGGCGAGGGAGAGGAGCTCCAACCCATGCTGTGGTGGATCATCGACCCAGAGCTTTAGAAATCAGCGGTTTCTCCGAGGCCGATCGAGTCGACCTGCTGCCACACTTCGCACAATACGGAGAGATTGAAGACTGCCAGATGGAGGATTCTAGTCTCAGTGCCATCATTACGTACAAAACCCGCGCAGAGGCTGAACAGGCGGCAATCCATGGCGTTCGGTTAAATAATCAGGAGTTACGTTTGGCCTGGCACAAACCCACTGCTTCCCTCAACACAACAGACCCAGATGAGGCTGAAGCAGAGGATGAGGAGTTTCCAGAGGACTCACTGGTGGACGATTCCCTGCTccaggatgatgatgaagaggaagagGATAACGAGTCGCGCTCATGGCGCAGATGAAGATGAAGTCTTCTGTCCGGTCCTGCTGCACTGCACCACTCGAGCACATCGCATATTGATTTCTGTGTTTTTCAAATGGTTGTTTTTAAACATTCTAATTTACattggcttttttattttaattattaatcccGAGCAGCAAGTAGAAACTGTCTGTCAGAAGGCTGTGAATTTGAATAACTGCGATGTATAATAACATGAATTATATGGTTTTTTTTACCCTCATGTATTATTTTCTATCATCGAAAAATTGccgctgcatttatttttttgtgttgttttaatggtcAGTTTGCTGACCCAAATTTTCTTTGAACATTTCTGACAATGTTACAGTTTGAGACAAATATGGGGTATATTACTATTTCAAAGACCACAGTAGAGCATTTTTGAACCATTGTTATAAACCGTTGTTCGCTTTCCTTAGTATTATCAGCCTAACGAGGATGTAGCTtttgtgtacatatattttgTGTATGAATTTTAATGGTTTGTATGAATTCTTTGCTTCTGGATTCATCTCCTGGGtttcattttgaaatgtaaaaaataaaaaaaattgaaatggtCTCGAAAAAATATCAgctggaaaaaaagaagaagaaaaaaatattgagaTCTCTGCTGCAAAAGCAGTAtggagaacaaacaaacaaacaaaaaaaaactgaacagctgAATACAAAGACCATTTCAACCCCCAACCCCCAATCCTCACAAAAAGAGCAATTTTCCTAAACCCATCACACACTTCACAGCACCTACAGGTAAGCAAGTAGcatagtgttgtcacgatactggaatttgataccattcggtactgtcattttaaaaacatcaatatCCCGCTAGCATTTGAGCGCATTCTTAAACAGCGCCGATTTGCCACTgggttcatgtgctcaacagaaatgacttaGATTGGCGGTGAAGCTCATCGGTTCACCAAACTCatcactgtttactgagtgtgaAACGCTAGAGTCCTTGTATCTGtgtttttaagggtgctttcacacctgtgaatcgattcagttctGAAAcggggattaaaattgttacattgttgctctttgctcttggtgcggttcgctttcacacggcaaaatttctaaacagaccaaaagagctaaaacaagtcacgtgtgagtaaactctccacGCATTGGTCAGTTTCACTGTTTATTTAGCAGAGTCCCGCTCCGCTGTCAGGGGGGTGGTGTTTGACGAATGTgacgaactgcgctaactgggcaaacgagacaggttccgaaacaaaagtctaggtgtaaaagcaccctaagtcaCGCCGatctgctggtttgtctataaactGACATACGAGTGACTTGCGGCTTTAAAACGCtgcagtgtccctgtatctgtgctTACACTCCGTAAACAGCTGTGGATTTGGTGAACCGAttaccttcatggccaatcacagtcatttctgttgagcacgtgaacccaatggcaaatcagcgctgtttaagagcGCGCTCAACAGAGCTCCAATGTTAGCGCTACTTGGACTATTTTAAAATtgcagtaccgattggtacctaattccagtatcgtgcaaaCCTAATGTAGCATGAGAAGCAGAAAATGAGGTAAgcattgtgtttttaaatttaatttgggtCATCTTCATTGGCATCTTTTCTAACCATTGTGTGTTTCTGCCCTTTAGGTTATGCGTGATGATGCATAACAGTACAATGATTGCAGATGAAGCTTGAACAGCATCAGATCCCCAAATGCATCCCACCACTTTTGGCTGCTTCTCCTGCTgcctctacagcaggggtgtccaacctcggtcctggagggctggtgtacacgagagtttagctccaaccctaatcaaacacacctgaaccagctaatcaagctattactagatatactagaaacatcctggCAGATGTGCTGAGGTAAGTTGAAGCTAatctcagcaggacaccggccctccaggactgaactTGGACACCCATGCTctacagcagtggtcaccaaagttgttcctggagggccggtgtcctgcagattttagctccaaccctaatcaaacacacctgaacaagctaatcaaagtcttgctcggtatacttgaaacatccaggcaggtgtgttgaggcatgctggagctaaaccctgcagggacaccggccctccaggaccaggattggtgacccctgctctacagtaTCATAGCATCGGATTTGCATAACAATAAACCGATCATCCAATCAGAGTGAAGGCGGTTGATTAAACTCTCCCACCATACACCACACTAAAGTTTAGCTCAAGGAGTAAACTGAGGTAAGCAATGTGTTTtcctatacctttttttttctacacactTCACAGCAACATCAGGTAAGCATGTAGCACGGGATGCAGAAAATGAGATAAGCAAAgtgtttacatttaatttcttttctaACCATTGTGTGTTTTTCCCTATTAGCTTATGCATGATGATGTATAGCAGTACAATGATTGCAGATGAAGATTGAACGACATCAGATCCCAAAATACATCATACCAGCCTACCTGTTACCAGTTTTGGCTACTTCTATTTGACACCTCTTCAGTATCAGCATCAAATTTGCATCACATTGAACAGATTATCCAATCAGAGTGGAAGCAGTTGATGCGACTTTGCCATCATGCTCCACTGTAAAGTTTAGCTCAAGCAGTAAACTGAG

Function

GO:

id name namespace
GO:0046833 positive regulation of RNA export from nucleus biological_process
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03019 Messenger RNA biogenesis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050706-50 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human RBM26 (RNA binding motif protein 26).

Ensembl:

ensembl_id ENSDART00000192368

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062279 lncRNA upstream 366479 4001317 ~ 4004456 (+) False XLOC_031792
TCONS_00064799 lncRNA upstream 366479 4001690 ~ 4004456 (+) True XLOC_031792
TCONS_00064798 lncRNA upstream 491720 3877672 ~ 3879215 (+) True XLOC_031790
TCONS_00064797 lncRNA upstream 520693 3827777 ~ 3850242 (+) False XLOC_031788
TCONS_00062270 lncRNA upstream 544810 3816049 ~ 3826125 (+) True XLOC_031787
TCONS_00064800 lncRNA downstream 114905 4518158 ~ 4520247 (+) True XLOC_031798
TCONS_00064600 lncRNA downstream 795016 5198269 ~ 5399444 (+) True XLOC_031802
TCONS_00064801 lncRNA downstream 1535212 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00064802 lncRNA downstream 1535212 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00062298 lncRNA downstream 1535224 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00062288 mRNA upstream 5604 4299164 ~ 4365331 (+) True XLOC_031796
TCONS_00062287 mRNA upstream 5855 4255319 ~ 4365080 (+) False XLOC_031796
TCONS_00062286 mRNA upstream 120781 4229360 ~ 4250154 (+) False XLOC_031795
TCONS_00062285 mRNA upstream 120781 4229360 ~ 4250154 (+) True XLOC_031795
TCONS_00062284 mRNA upstream 194094 4160579 ~ 4176841 (+) False XLOC_031794
TCONS_00062292 mRNA downstream 125378 4528631 ~ 4536338 (+) True XLOC_031799
TCONS_00062293 mRNA downstream 136700 4539953 ~ 4543005 (+) True XLOC_031800
TCONS_00062295 mRNA downstream 469630 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062294 mRNA downstream 469630 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062296 mRNA downstream 469635 4872888 ~ 4877176 (+) True XLOC_031801
TCONS_00062276 other upstream 520693 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 532707 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062248 other upstream 1121465 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062246 other upstream 1205213 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062191 other upstream 4266213 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062297 other downstream 1280928 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062300 other downstream 1812541 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062305 other downstream 1868614 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062321 other downstream 2428793 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 2476674 6879927 ~ 6880049 (+) True XLOC_031817

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_05539614_05541496.mRNA True 2385 mRNA 0.39 5 CI01000024 5537794 ~ 5541496 (+)