RNA id: TCONS_00062296


Basic Information

Item Value
RNA id TCONS_00062296
length 3753
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_031801
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4872883 ~ 4984243 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGAAGAGGAGAGAGCGAGGATAAGCATCCCAACACATCTCACCGTTTGGACTTTTTCCCTCATTCAGGTGTGCGCGGCGAATCACGCACAAGACACCGGGACTGAAGCCGTGGATTTTCTTTCTAGCTGAGGACTGAGTGAGGAACGATCTGATCGTATTTCAACTTGACTCTTTTTTTCTCAGATGGGATagtttatgtttatatttgagCAGAACAGGTGCATTTCTGAAGGGCTCCTCCGGTAATGCGGAATGACCGTACGGGACCGTTAACGCGCGCGTGGATCACCTGATTCATCACCGACCACCGCATTCCGCGCGCCACCGATCTGCGGGAGAAAGTTAATAAAGATTGTCTGATTGATTACTGCTAAATCAACATTTCCTCCCAAAAACCAGCTGTTCtttgaattggattttttttgcacgtctaaaatacttaaatattcaCTGACCTAGTCCTCTAAGCAGTGATCAGCACGGATACCTTCATTTTATATTGGAGTCGGATCATTTTTCTGGCTGCTTGATCGGATTTGTCACTATGTCCGTGAATTGATAACCTCCGTATGAGCAAGCTCACAGTGAACCGAGGGTCGTGTTTGGCTGCACTTTATCTACAAATGTAAGGCTCTGTGAAACCTTGGCTCTGACAACACCATATGGAGACAACTGTTTGAATTAAAGCAGCGGGAACACGCGTGAACTGCTGTCATGGATTTAAGGGATTTTTTCTTGTTGGCAACATTAGTTGCTTGTTTCTGGTTAGATCCAACCATAGCCCAAGAGCTCATTTACCCTATCCGAGAAGAGCTACAGGAGAATGTTCTTATTGGAAACATACCAAAGGACTTGAACATCTCTCATATGAACTCTGCCACCGGGGCTACCAGTAATCTGGTTTACCGACTTGTTTCAAAAGCAGGTGACACCCCGCTACTTAGAGTGATGAGCAATACTGGAGAAATCTTTACCACCTCCAACCGAATAGACAGAGAGAAACTCTGTCCTGGCCCCTCTTTTGAGGACAGCGAGTGCTCCTTTGAAATCGAGGTGGTCATTTTGCCCAATGACTATTTcagattaattaaaattaaaatcattgTCAAAGACACCAATGACAATGCCCCCATGTTCCCCTCGCCTGTGATCAACATTTCAATTCCAGAAAACACGCTCATCAACAGCCGCTTTGCTATTCCTTCTGCCACTGATCCAGATACCGGACCTAACAGCGTACACAAATATGAGCTGCTGAATGGGCAGAGCGCCTTCGGTTTGGATATTGTAGAGACCCCAGAGGGTGAGAAGTGGCCTCAGCTCATTGTTCAGCAGAATTTAGACAGAGAGCAGAAAGATACGTATGTTATGAAAGTCAAAGTGGAGGATGGGGGGAACCCACAGAAATCCAGCACTGCCATTCTACAGGTGACCGTCACTGATGTTAATGATAACCGACCTGTCTTTAAAGAGAGCCAAATTGAGGTTCACATCCCAGAAAATTCCCCTGTTGGCACATCGGTAGTCCAGCTGCAAGCCACCGATGCAGATGTGGGGGCTAATGcagaaataaaatacatgttCGGTGCTCAGGTGTCTCCGGCGACACGGAGACTTTTCGCTCTGAACACCACCACCGGGCTCATAACAGTTCAAAGGCCACTTGATAGAGAGGAGACTGCCATTCATAAACTCACAGTACTAGCCAGCGATGGAAGCTCGAGTCCAGCAAGAGCCACTATCACTATTAATGTGACTGATGTGAATGACAACGCTCCAAACATTGACCTAAGGTACATCATCAGTCCAACCAACGGTACTGTGATGCTTTCTGAAAAAGATCCAATTAATACTAAAATCGCCCTCATTACTGTATCTGACAAAGACACGGATGTCAACGGCAAGGTTATTTGCTTTATTGAAAAAGATGTTCCCTTTCATCTCAAAGCAGTTTATGATAACCAGTATTTGTTAGAAACATCTGCACTGCTTGATTATGAAGGAACAAAGGAGTACATCTTCAAGATCGTGGCTTCTGACTCTGGAAAACCTAGTTTAAACCAGACCGCCCTGGTCAGAGTACGGCTGGAGGATGAGAACGACAATCCGCCCATTTTCACCCAGCCTGTCATCGAGCTGGCGGTCATGGAGAACAACCTGCGCGACATGTTCCTGACAACCATCAGTGCCACGGATGAGGACAGCGGACGAAATGCAGAGATTGTCTACCAGCTTGGACCCAACGCATCATTCTTTGATCTTGACCGCAAAACAGGAGTGCTAACAGCATCCAGGGTGTTTGATAGGGAGGAACAAGAGCGGTTCCTCTTCACAGTCACCGCTAGAGACAATGGCACCAGGGCTCTGCAGAGTCAAGCTGCAGTAATAGTGACTATACTTGACGAGAATGACAACAGTCCTAAATTTACACACAACCACTTTCAATTCTTTGTGTCGGAGAATCTGCCTAAATATAGTACGGTTGGCGTAATCACAGTCACAGATGCAGATGCTGGTGAGAATGCAGTGGTGAGGCTCTCAATCCTTAACGATAATGAGAACTTCATCCTCGACCCAGATTCTGGAGTCATAAAGTCCAATGTTTCCTTTGACAGAGAACAGCAAAGCTCATACACCTTTGATGTTAGAGCTGTGGACAATGGAAGCCCTCCATGTTCGTCAGCTGCCAAGGTGACAATAAATGTCATCGATGTCAATGATAACACCCCCATTGTCATCTACCCACCATCCAATACCTCTTTCAAACTAGTCCCACTGTCTGCGATTCCAGGGTCTGTTGTGGCTGAGGTGTTTGCAGTAGATGGTGATACAGGTATGAATGCAGAACTCAAATACACTATTGTGAGTGGCAATGTCAGAAGTCTTTTCAGGATTGACCCTGTAACAGGAAACATCACATTAGAGGAGAAACCTACAATCGCAGACATTGGCCTCCACAGGCTAGTGGTCAACATCAGTGACCTTGGCTATCCTAAATCCCTGCACACCCTTGTTCTTGTTTTCCTGTTTGTAAATGACACAGTTGGAAATTCCTCATATATACATGATCTAATCCGTCGGACAATGGAAACGCCGCTAGATAGGAACATTGGCGAGAGCAGCGAGACTTATCAAAATGTTGACAACCTAAAAACCATCATTGCCATCGTGACAGGTGCTATGGTCGTGATCGTGGTCATCTTCATAACGGTTTTAGTGCGCTGCCGACATGCCTCACAGTTTAAAGCTGCTCAGAGAAAGAAACAGGGTGCCGAGTGGATGTCCCCCAACCaggaaaacaagcaaaacaagaaGAAGAAGCGCAAAAAGAGGAAGTCACCAAAGAGCTCCCTCTTAAACTTTGTCACCATCGAGGAGAACAAACCCGACGACCCCGCCCACGAACCCATAAACGGAACCATCAGTCTCCCAGCTGAGCTCGAAGAGCCTGGGATTGGACGCTTTGATTGGAATGCCACCCCTACCACCACCTTCAAACCCAGCAGCCCAGACTTGGCCCGGCACTACAAGTCCGCTTCACCCCAGTCAGCCTTCCACCTCAAAGCTGACACTCCGGTGTCTGTGAAAAAGCATCACGTCATTCAGGAGCTGCCACTGGACAATACCTTTGTTGGAGGCTGTGATACGCTTTCCAAACGTTCCTCCACCAGCTCTGATCACTTCAGTGCCTCAGAATGCAGCTCACAAGGAGGCTTCAAGTCAAAGGGGGCACCTTTGCACACCAGACAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000151674

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064800 lncRNA upstream 352641 4518158 ~ 4520247 (+) True XLOC_031798
TCONS_00062279 lncRNA upstream 868432 4001317 ~ 4004456 (+) False XLOC_031792
TCONS_00064799 lncRNA upstream 868432 4001690 ~ 4004456 (+) True XLOC_031792
TCONS_00064798 lncRNA upstream 993673 3877672 ~ 3879215 (+) True XLOC_031790
TCONS_00064797 lncRNA upstream 1022646 3827777 ~ 3850242 (+) False XLOC_031788
TCONS_00064600 lncRNA downstream 321093 5198269 ~ 5399444 (+) True XLOC_031802
TCONS_00064801 lncRNA downstream 1061289 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00064802 lncRNA downstream 1061289 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00062298 lncRNA downstream 1061301 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00064803 lncRNA downstream 1208060 6085236 ~ 6086132 (+) True XLOC_031805
TCONS_00062293 mRNA upstream 329883 4539953 ~ 4543005 (+) True XLOC_031800
TCONS_00062292 mRNA upstream 336550 4528631 ~ 4536338 (+) True XLOC_031799
TCONS_00062289 mRNA upstream 469635 4370935 ~ 4403253 (+) False XLOC_031797
TCONS_00062299 mRNA downstream 1337866 6215042 ~ 6237589 (+) True XLOC_031806
TCONS_00062301 mRNA downstream 1393510 6270686 ~ 6273519 (+) False XLOC_031808
TCONS_00062302 mRNA downstream 1393556 6270732 ~ 6273516 (+) False XLOC_031808
TCONS_00062306 mRNA downstream 1613837 6491013 ~ 6541519 (+) True XLOC_031809
TCONS_00062307 mRNA downstream 1785303 6662479 ~ 6666426 (+) True XLOC_031810
TCONS_00062276 other upstream 1022646 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 1034660 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062248 other upstream 1623418 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062246 other upstream 1707166 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062191 other upstream 4768166 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062297 other downstream 807005 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062300 other downstream 1338618 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062305 other downstream 1394691 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062321 other downstream 1954870 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 2002751 6879927 ~ 6880049 (+) True XLOC_031817

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_05871241_05877617.mRNA True 4459 mRNA 0.47 3 CI01000024 5870239 ~ 5877918 (+)