Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00064365 |
| length | 638 |
| lncRNA type | retained_intron |
| GC content | 0.50 |
| exon number | 4 |
| gene id | XLOC_033117 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 45874595 ~ 45905746 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0033674 | positive regulation of kinase activity | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043235 | receptor complex | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0005003 | ephrin receptor activity | molecular_function |
| GO:0005005 | transmembrane-ephrin receptor activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-63 | Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in tail bud. Human ortholog(s) of this gene implicated in cataract 6 multiple types. Orthologous to human EPHA2 (EPH receptor A2). |
| ensembl_id | ENSDART00000149099 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064354 | lncRNA | downstream | 1872700 | 43979711 ~ 44002542 (-) | False | XLOC_033111 |
| TCONS_00065221 | lncRNA | downstream | 1872701 | 43988556 ~ 44002541 (-) | True | XLOC_033111 |
| TCONS_00064339 | lncRNA | downstream | 2526156 | 43346929 ~ 43349086 (-) | True | XLOC_033106 |
| TCONS_00064338 | lncRNA | downstream | 2580481 | 43268509 ~ 43294761 (-) | True | XLOC_033105 |
| TCONS_00064337 | lncRNA | downstream | 2609236 | 43264992 ~ 43266006 (-) | False | XLOC_033105 |
| TCONS_00065222 | lncRNA | upstream | 44802 | 45923942 ~ 45929175 (-) | True | XLOC_033118 |
| TCONS_00064370 | lncRNA | upstream | 223074 | 46102214 ~ 46162585 (-) | True | XLOC_033120 |
| TCONS_00064373 | lncRNA | upstream | 415221 | 46294361 ~ 46310011 (-) | True | XLOC_033123 |
| TCONS_00064380 | lncRNA | upstream | 688994 | 46568134 ~ 46571429 (-) | True | XLOC_033127 |
| TCONS_00064398 | lncRNA | upstream | 1956213 | 47835353 ~ 47838372 (-) | True | XLOC_033139 |
| TCONS_00064362 | mRNA | downstream | 6078 | 45843193 ~ 45869164 (-) | False | XLOC_033116 |
| TCONS_00064363 | mRNA | downstream | 6115 | 45844507 ~ 45869127 (-) | True | XLOC_033116 |
| TCONS_00064361 | mRNA | downstream | 1163300 | 44584775 ~ 44711942 (-) | True | XLOC_033115 |
| TCONS_00064358 | mRNA | downstream | 1472884 | 44243070 ~ 44402358 (-) | False | XLOC_033114 |
| TCONS_00064357 | mRNA | downstream | 1472884 | 44243070 ~ 44402358 (-) | False | XLOC_033114 |
| TCONS_00064366 | mRNA | upstream | 58637 | 45937777 ~ 45949121 (-) | True | XLOC_033119 |
| TCONS_00064367 | mRNA | upstream | 72753 | 45951893 ~ 46162585 (-) | False | XLOC_033120 |
| TCONS_00064368 | mRNA | upstream | 73403 | 45952543 ~ 46053300 (-) | False | XLOC_033120 |
| TCONS_00064369 | mRNA | upstream | 93307 | 45972447 ~ 45995401 (-) | False | XLOC_033120 |
| TCONS_00064374 | mRNA | upstream | 474770 | 46353910 ~ 46398584 (-) | False | XLOC_033124 |
| TCONS_00064360 | other | downstream | 1595028 | 44254721 ~ 44280214 (-) | True | XLOC_033114 |
| TCONS_00064349 | other | downstream | 1984780 | 43790137 ~ 43890462 (-) | False | XLOC_033109 |
| TCONS_00064351 | other | downstream | 1984780 | 43847860 ~ 43890462 (-) | False | XLOC_033109 |
| TCONS_00064350 | other | downstream | 1984810 | 43832025 ~ 43890432 (-) | False | XLOC_033109 |
| TCONS_00064352 | other | downstream | 1984815 | 43879375 ~ 43890427 (-) | True | XLOC_033109 |
| TCONS_00064371 | other | upstream | 288877 | 46168017 ~ 46251940 (-) | True | XLOC_033121 |
| TCONS_00064372 | other | upstream | 348977 | 46228117 ~ 46228232 (-) | True | XLOC_033122 |
| TCONS_00064391 | other | upstream | 1277162 | 47156302 ~ 47156416 (-) | True | XLOC_033135 |
| TCONS_00064395 | other | upstream | 1723459 | 47602599 ~ 47602715 (-) | True | XLOC_033138 |
| TCONS_00064408 | other | upstream | 2501105 | 48380245 ~ 48381223 (-) | True | XLOC_033145 |
