RNA id: TCONS_00064368


Basic Information

Item Value
RNA id TCONS_00064368
length 3741
RNA type mRNA
GC content 0.50
exon number 29
gene id XLOC_033120
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 45951893 ~ 46162585 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACAGATGTTTCTACCTTTTAATTAGTGCATGTTGGTTTATGTTAAAGGGGCGGGGCTTTGCCTTTGAAGGGGAGCCCCAAATTTTCttattaatttttccatattCGTTCACAGGCACCTACGGACCTCGGAGATGGGCCTCGGCTTATCCAGAATGTGGGGAGAGGAATCAGTCTCCAGTGGACATCCTAGATCCAGAAACCCAAGTCTCTCAGGAGTGCCAGGAGCTCACGTTGGATGGCTTCGAAACCAAGTCCTCCAACAGGACCACTATGAAGAACACAGGCAAAACAGtttctATTGTTCTGAAGAATGATTACTTTGTGAGAGGGGCAGGCCTTCCCGGACGCTTCAAGGCAGAAAAGGTGGAGTTTCACTGGGGCAGCACCAATGGTTCGGCTGGTTCTGAGCACAGCATCAATGGAAAGAAGTTTCCGGTAGAAATGCAGATTTATTTCTACAATTCAGATGACTTTGACAGTCTGAGCACCGCCATAAAGGAGAGACGAATCATCGCTGCCATGGCTGTCTTCTTTCAGGTGGCGACGAAAGACAATATCGCAGCTGAGCCAATCATCGCTGGTCTCAAACGGGTTGTCCATCACGAAAAGGAAACAAACCTGGGTTCATTCATACTGAGGGATCTCTTGCCATCATCTTTGGGCAGTTATTACCGCTACACTGGCTCGCTCACAACACCTCCGTGCAGTAAAGTGGTGGAGTGGATCATCTTCAGTCGACCTGTTTACCTGTCCTACCACCAGCTCGAGGCGTTTTATTCCATCTTCACCACAGAGCAGCAGGATCATGTGAAGTCTGTGGATTACCTGAGGAATAACCATCGGCCCATTCAAGATCTCGACAGCCGGCGAATCTTCAAATCGGCTCTAATGGATGCCTGGATGCCTGAGACCATGGCCAGCGCCGCAGACACAGAAACATCTCGAGTCTGCAGCAGCATTCCTGACAACATGAAGTTGCATCCGCTGAACAGAACAGCTCTGGTGTTGACCTGGGACCGACCCTCAGCCGTCTACCACCCACCTATTGTCGGCTTCCTTGTCTCCTACAGCTGGGTGAAGGATGAAATGCCATTCGAGAAGACCTTCACACAGAGCAGCGAACACAGCACGAGGGCAGTCATCACACTCGTGTCTCCAGATGTCCTGTATCTCTTCAGAGTGCAAGCTTTGTGTCAGAGAGACCAGCGCAGTGACTTCAGCCAGACTCTTCTATTCAAAGCAAACACCACAAGGATATTCGAAGGCACAAGGATTGTAAAAACCGGCATGCCTACAGTTTCTCCGGCCTCTTCAGCAGACATGGCCCCCATCAGCTCAGGCTCTTCAACCTGGACGTCGGCTGGCCTCCCCTTCTCCTTCGTCTCTATGGCCACAGGAATGGGTCCACCATCCAGTGGAGGACAGGCCACCGTCGCTTCTGTGGTGACCAGCACATTATTAGCCGGCCTGGGCTTCAGCGGCAGTGTCATTTCATCCCTTCCTGGATCCTTCTGGCCAACGCATTCAACAAATACAGGCCCGTCGCCTACTCAACATCCAGCCACTCCAACAGCCGAAAACAGCCCATCTGAAGACAGAAATGCATTTAAACTCTCTCCATCTATTATAAAACAACTTTTCAACCTTTCTCTGGTGTTATTTGACCGTCCTGCAGAGAGAAACAGCATCTCCACTGTCAGCCGGGACTCAGTGTCGTCCTCCAGCCGGATGGAGTGGATCATCCCTCTGATGGTGGTCTCTGCCCTCACTCTGCTCTGTCTCATCATGCTGCTGGCCGTCCTGGTCTACTGGAGGAGATTCTTCCAGACGGCACATTTCTATATTGAAGACAGAAACTCCCCCAGAGTGATCCACAATGACAGCTTCCCCATCATCTCTACAGCCGATGACCTGGAGGCCATGCCAGTCCGGCAGTTCATCAAACACATCATGGAGCTTCACTCCAACAACCGGCATGGCTTTTCTCAGGAGTTCGATGAGGTCCAACACTGCACATCAGAAATGAAGATTACAGCAGAACACTCCAATCACCCAGaaaacaagcacaaaaacagaTACATCAACATCGTAGCCTATGATCACAGCAGAGTGAAGTTACAGCAACTGCCTGGGAAAGACTCCAAGCACAGTGACTACATCAATGCCAACTATGTGGACGGGTATAAAAGAGCCAGGGCTTACATCGCAGCTCAAGGCCCTCTCAAGTCCACGTTTGAGGATTTTTGGAGAATGATCTGGGAACAAAACACCACTGTGATTGTCATGATCACAAATTTAGTGGAGAAAGGCAGGAGGAAATGTGATCAGTACTGGCCGTCGGAGAACAGCGAGGTGTATGGTAACATAATGGTGACTCTGAAGAGCACTAAAGTTTATGCTTACTATACACTCCGACATTTCATCGTACGCAACAGCAAACTGAAAAAGGGTCAGAAGGGAAGGCAGAACGAGCGTCTGGTGCTTCAATATCATTACACACAGTGGCCAGACATGGGAGTTCCTGAATACACTTTACCAGTCCTCAAATTCATCAGTCGCTCTACAGTGACGCACGCATCCAGCACAGGTCCCGTTCTGGTGCACTGCAGtgctGGAGTGGGCAGAACAGGCACATATATAGTGATCGACAGCATGTTGAAGCAGATAAAGGACAGAGGCAGCGTCAATGTCCTGGGATTCCTGAAACACATCCGAGAGCAGAGAAACTACCTGGTCCAGACTGAGGAGCAGTTTATCTTCATCCATGACGCACTAATGGAAGCAGTGCTCAGTAAAGACACCGAGGTTTCAGCCTGGCAGCTCCACACGTACACGAACAGCCTCCTGACGCCGAGCCCCACAGGACACACACGCATGGACAAACACTTTAAGTTGTTGACGCAGTGCAATGCTCATCTCGCCGAGTGTTTGAGTGGCCAGAAAGAGTGTAATAAAGAGAAGAACCGCACATCCGCCGTCTTGCCAACTGAACGGGCTCGTGTGGCGCTCTCTCCTCTTCCAGGCCTGAAGGGAACAGACTACATCAATGCCTCTTACATCATGGGTTATTACAGGAGCAACGAGTTCATCATCACCCAGCATCCTTTGCCTCACACCACCACCGACTTCTGGAGGATGATTTGGGATCATAATGCGCAGGTTATCGTGATGCTGCCGGATAACCTCGGCCTTACTGAGGATGAGTTTGTGTACTGGCCCAGCAGAGAGGAGCCCATGAACTGCATAGCCTTCACTGTCACCCTCATTAACACCGACAGACTTTGCTTGTCCAATGAGGAACAGCTCATCATCCACGACTTCATCCTGGAAGCCACGCAGGACGATTATGTGCTAGAAGTCCGACATTTCCAGTGTCCGAACTGCAGCACATTTGAGCTTATCAACATCATCAAAGAAGAGGCAATGACACGGGACGGTCCCACCATCGTGCACGATGAGTTTGGCGCAGTCTCTGCCGGGACGTTTTGTGCTCTGACAACACTTTCCCAACAGCTGGAGAACGAGAGCGCTGTGGATGTCTATCAAGTGGCCAAAATGATCAATCTAATGAGGCCTGGTGTCTTCACTGAAATCGAGCACTACCACTACCTTTACCAGGCAATGCTCAGCCTTGTCAGCAGTAAAgacttcagatttggcttcaactACATGGACAAATTCGCTGGAAAAGCGGATGAATCCAACCAGGCTGAGAGCATGGAGTCTTTGGTGTGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080818-1 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; neural rod; neural tube; and pronephric duct. Orthologous to human PTPRG (protein tyrosine phosphatase receptor type G).

Ensembl:

ensembl_id ENSDART00000169722

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065222 lncRNA downstream 23368 45923942 ~ 45929175 (-) True XLOC_033118
TCONS_00064365 lncRNA downstream 73403 45875242 ~ 45879140 (-) True XLOC_033117
TCONS_00064354 lncRNA downstream 1950001 43979711 ~ 44002542 (-) False XLOC_033111
TCONS_00065221 lncRNA downstream 1950002 43988556 ~ 44002541 (-) True XLOC_033111
TCONS_00064339 lncRNA downstream 2603457 43346929 ~ 43349086 (-) True XLOC_033106
TCONS_00064370 lncRNA upstream 48914 46102214 ~ 46162585 (-) True XLOC_033120
TCONS_00064373 lncRNA upstream 241061 46294361 ~ 46310011 (-) True XLOC_033123
TCONS_00064380 lncRNA upstream 514834 46568134 ~ 46571429 (-) True XLOC_033127
TCONS_00064398 lncRNA upstream 1782053 47835353 ~ 47838372 (-) True XLOC_033139
TCONS_00065223 lncRNA upstream 1926005 47979305 ~ 48051590 (-) False XLOC_033141
TCONS_00064366 mRNA downstream 3422 45937777 ~ 45949121 (-) True XLOC_033119
TCONS_00064364 mRNA downstream 46797 45874595 ~ 45905746 (-) False XLOC_033117
TCONS_00064362 mRNA downstream 83379 45843193 ~ 45869164 (-) False XLOC_033116
TCONS_00064363 mRNA downstream 83416 45844507 ~ 45869127 (-) True XLOC_033116
TCONS_00064361 mRNA downstream 1240601 44584775 ~ 44711942 (-) True XLOC_033115
TCONS_00064374 mRNA upstream 300610 46353910 ~ 46398584 (-) False XLOC_033124
TCONS_00064375 mRNA upstream 303148 46356448 ~ 46403475 (-) True XLOC_033124
TCONS_00064376 mRNA upstream 405116 46458416 ~ 46474483 (-) True XLOC_033125
TCONS_00064377 mRNA upstream 454309 46507609 ~ 46560207 (-) False XLOC_033126
TCONS_00064378 mRNA upstream 454519 46507819 ~ 46565466 (-) True XLOC_033126
TCONS_00064360 other downstream 1672329 44254721 ~ 44280214 (-) True XLOC_033114
TCONS_00064349 other downstream 2062081 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064371 other upstream 114717 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064372 other upstream 174817 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064391 other upstream 1103002 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064395 other upstream 1549299 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064408 other upstream 2326945 48380245 ~ 48381223 (-) True XLOC_033145

Expression Profile

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