RNA id: TCONS_00064376


Basic Information

Item Value
RNA id TCONS_00064376
length 1106
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_033125
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46458416 ~ 46474483 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATCATTCCCTCCCTCAGTCAACCACACTGAGGCATACCTGAGCAACGCCATGATCTTCCTAATGGATTTACAGGTGATGCTGCTGGATGTGCTGTACTTCATCCTGCGCTCCTGTCTGCGGCTCGTGTTCAGACCCCGCACGAAGCCCATAGACGGCGAGTTGGTGCTAATAACCGGCTCTGGGGGTGCTTTGGGGCGGCTGTTCGCCCTGGAGTTCACCAAACACGGCGCAGAAGTGGTGCTGTGGGACGTCAACGGGGAAGCTAATGAGGACACCGCCAAACTGGTGAGGGCGCGAGGGGGGCAGGCGCACGCGTACACGGTGGATGTGACAAAACGGGAAGAAGTTTACCGGACAGCCGACCTCGTACGGGAGGAGGTGGGAAGAGATGTGACCTACCTGGTGAACAATGCCGGGGTGGTCGCCGGTGAGAGACTTCTGGACTGTCCCGATTACTTGTTGGAGAGGACCCTGAAAGTAAACTGCCACGCTctcttctggACTGTGAAGGCATTCCTGCCCCAGATGAAGGATAAAAATCATGGGCACATCATCACTATAGCCAGCGTTCTTGGACTCTTCAGCACAGCCTGTGTAGAGGACTACTGTGCCAGTAAGTTTGCTGCAGTGGGGTTTCATGAATCTCTGGCCCATGAACTGCTGACCGAAGACTTGGATGGAGTGAAAACTACTCTTGTGTGTCCTTATATTGTGGACACTGGCATGTTTGAAGGCTGCAGAATCAGGGAGGAAGTTGCGCTGATCCTGCCTCCATTGGAGCCCTTGTACTGTGTCCAGCAGGCCATGAATGCCATTCTGATAGACCAGCCATTAGTTTGCATCCCCAGACTAACATACCTTCCCTTCCTGGCCAGAGCTCTTTTACCATGGGAATCCAATGCGGTGACATATCGCTTTATGGGTTCAGACAACTGCATGTATCCATTCATTGAGACCATGAAGAAGAGAGGAGGCAATAGCCCACTGAAAGCTGATTAACACAGATACGAATCCTGCAGCCACTGATGTGTTACATGTTGAAATTAACACTGATGTGTGGGTAAATCCTGTTTGAAGTAAAATGAaaatcttttgtttattt

Function

GO:

id name namespace
GO:0005811 lipid droplet cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-122 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be active in lipid droplet.

Ensembl:

ensembl_id ENSDART00000155761

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064373 lncRNA downstream 148405 46294361 ~ 46310011 (-) True XLOC_033123
TCONS_00064370 lncRNA downstream 295831 46102214 ~ 46162585 (-) True XLOC_033120
TCONS_00065222 lncRNA downstream 529241 45923942 ~ 45929175 (-) True XLOC_033118
TCONS_00064365 lncRNA downstream 579276 45875242 ~ 45879140 (-) True XLOC_033117
TCONS_00065221 lncRNA downstream 2455875 43988556 ~ 44002541 (-) True XLOC_033111
TCONS_00064380 lncRNA upstream 93651 46568134 ~ 46571429 (-) True XLOC_033127
TCONS_00064398 lncRNA upstream 1360870 47835353 ~ 47838372 (-) True XLOC_033139
TCONS_00065223 lncRNA upstream 1504822 47979305 ~ 48051590 (-) False XLOC_033141
TCONS_00064401 lncRNA upstream 1504822 47979305 ~ 48061524 (-) False XLOC_033141
TCONS_00064756 lncRNA upstream 1571803 48046286 ~ 48061659 (-) True XLOC_033141
TCONS_00064375 mRNA downstream 54941 46356448 ~ 46403475 (-) True XLOC_033124
TCONS_00064374 mRNA downstream 59832 46353910 ~ 46398584 (-) False XLOC_033124
TCONS_00064367 mRNA downstream 295831 45951893 ~ 46162585 (-) False XLOC_033120
TCONS_00064368 mRNA downstream 405116 45952543 ~ 46053300 (-) False XLOC_033120
TCONS_00064369 mRNA downstream 463015 45972447 ~ 45995401 (-) False XLOC_033120
TCONS_00064377 mRNA upstream 33126 46507609 ~ 46560207 (-) False XLOC_033126
TCONS_00064378 mRNA upstream 33336 46507819 ~ 46565466 (-) True XLOC_033126
TCONS_00064379 mRNA upstream 93636 46568119 ~ 46589726 (-) False XLOC_033127
TCONS_00064381 mRNA upstream 251057 46725540 ~ 46735380 (-) True XLOC_033128
TCONS_00064382 mRNA upstream 261768 46736251 ~ 46742455 (-) True XLOC_033129
TCONS_00064371 other downstream 206476 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064372 other downstream 230184 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064360 other downstream 2178202 44254721 ~ 44280214 (-) True XLOC_033114
TCONS_00064351 other downstream 2567954 43847860 ~ 43890462 (-) False XLOC_033109
TCONS_00064350 other downstream 2567984 43832025 ~ 43890432 (-) False XLOC_033109
TCONS_00064391 other upstream 681819 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064395 other upstream 1128116 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064408 other upstream 1905762 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064412 other upstream 2137551 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064417 other upstream 2641536 49116019 ~ 49159094 (-) True XLOC_033153

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_12827332_12832015.mRNA True 1699 mRNA 0.46 5 CI01000340 12827282 ~ 12832626 (-)