RNA id: TCONS_00064374


Basic Information

Item Value
RNA id TCONS_00064374
length 1161
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_033124
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46353910 ~ 46403475 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCTTTAGGAGAAGATGAAAATGGATGGAAAAAGAAGACAACTGATATCAAGGAGAATTATGATTTCAAGGAGGTCTTGGGAACGGGGGCTTTCTCTGAGGTGTTTCTGGCTGAGGAGAAGAAGACCCAGCGACTTGTTGCCATTAAATGCATCCCTAAGAAAGCACTGGAGGGGAAAGAGAACAGCATCGAGAATGAGATTGCTGTGCTACACAGaaTAAAACATGAGAATATTGTTTCCCTGGAGGACATCTTCGAGAGTCAGTCACATTTGTATCTGGTCATGCAATTAGTATCAGGAGGAGAGCTCTTCGACAGGATTGTTGAAAAGGGTTTCTACACTGAGAGAGATGCCAGCAAACTCATCCGTCAGATATTAGATGCAGTGAAGTATCTGCATGATATGGGCATCGTACACAGAGACCTGAAGCCGGAGAATCTGCTGTATTACAGTATGGAGGAGGATTCGAATATCATGATCAGTGACTTTGGCCTGTCCAAGATCGAGGACTCTGGGAGTGTGATGTCCACTGCCTGCGGAACGCCTGGATACGTGGCTCCAGAGGTCTTGGCACAGAAACCATACAGTAAAGCTGTAGACTGTTGGTCCATAGGAGTCATTTCTTATATCCTTTTATGTGGCTACCCCCCATTTTATGATGAAAATGATGCCAAGCTGTTCGAGCAGATCTTAAAAGCAGAGTATGAGTTTGACTCTCCGTACTGGGACGATATCTCTGATTCAGCCAAGGACTTCATCAGTCACTTGATGGAGAAAGATCCGTCTCTGAGATACACGTGTGAACAGGCTTTACTGCACCCATGGATCTCTGGAGACACAGCGCTGGATAAGAACATTCATGAATCTGTCAGTGCTCAGATCAAGAAGAACTTTGCTAAAAGTAAATGGAAGCAAGCCTTCAATGCGACAGCAGTGGTCAGACACATGCGGAGACTGCAGCTGAGCACCAGCCTCGAGGGTCCGAGCCAAATCACCAGCACCAGCCCGTACAGACACCTGCTGCTGCCCTCCCTGTATCTGTTCATGTTCACCTCTTCATGTTCAGGCTCTCCCAGTGTGGACGGCCGTCGAGGCAGTGCTGATCGGGACAGTCTCAGGAGCTGTGCTTACTGCTGCCGACCAACCAGCAGGATCTGA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-147 Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMK1 (calcium/calmodulin dependent protein kinase I).

Ensembl:

ensembl_id ENSDART00000193098

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064373 lncRNA downstream 43899 46294361 ~ 46310011 (-) True XLOC_033123
TCONS_00064370 lncRNA downstream 191325 46102214 ~ 46162585 (-) True XLOC_033120
TCONS_00065222 lncRNA downstream 424735 45923942 ~ 45929175 (-) True XLOC_033118
TCONS_00064365 lncRNA downstream 474770 45875242 ~ 45879140 (-) True XLOC_033117
TCONS_00064354 lncRNA downstream 2351368 43979711 ~ 44002542 (-) False XLOC_033111
TCONS_00064380 lncRNA upstream 169550 46568134 ~ 46571429 (-) True XLOC_033127
TCONS_00064398 lncRNA upstream 1436769 47835353 ~ 47838372 (-) True XLOC_033139
TCONS_00065223 lncRNA upstream 1580721 47979305 ~ 48051590 (-) False XLOC_033141
TCONS_00064401 lncRNA upstream 1580721 47979305 ~ 48061524 (-) False XLOC_033141
TCONS_00064756 lncRNA upstream 1647702 48046286 ~ 48061659 (-) True XLOC_033141
TCONS_00064367 mRNA downstream 191325 45951893 ~ 46162585 (-) False XLOC_033120
TCONS_00064368 mRNA downstream 300610 45952543 ~ 46053300 (-) False XLOC_033120
TCONS_00064369 mRNA downstream 358509 45972447 ~ 45995401 (-) False XLOC_033120
TCONS_00064366 mRNA downstream 404789 45937777 ~ 45949121 (-) True XLOC_033119
TCONS_00064364 mRNA downstream 448164 45874595 ~ 45905746 (-) False XLOC_033117
TCONS_00064376 mRNA upstream 59832 46458416 ~ 46474483 (-) True XLOC_033125
TCONS_00064377 mRNA upstream 109025 46507609 ~ 46560207 (-) False XLOC_033126
TCONS_00064378 mRNA upstream 109235 46507819 ~ 46565466 (-) True XLOC_033126
TCONS_00064379 mRNA upstream 169535 46568119 ~ 46589726 (-) False XLOC_033127
TCONS_00064381 mRNA upstream 326956 46725540 ~ 46735380 (-) True XLOC_033128
TCONS_00064371 other downstream 101970 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064372 other downstream 125678 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064360 other downstream 2073696 44254721 ~ 44280214 (-) True XLOC_033114
TCONS_00064349 other downstream 2463448 43790137 ~ 43890462 (-) False XLOC_033109
TCONS_00064391 other upstream 757718 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064395 other upstream 1204015 47602599 ~ 47602715 (-) True XLOC_033138
TCONS_00064408 other upstream 1981661 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064412 other upstream 2213450 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064417 other upstream 2717435 49116019 ~ 49159094 (-) True XLOC_033153

Expression Profile

//