RNA id: TCONS_00064393


Basic Information

Item Value
RNA id TCONS_00064393
length 5479
RNA type mRNA
GC content 0.51
exon number 22
gene id XLOC_033137
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 47529881 ~ 47796989 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAACCTCCACCTGAGAGCCATCCAGTCACAGGCCGCACTGGCTGTTCACGGAGAGCGCGCGCGCGTTACACACTCGCTTCATTTGACAAACACAAGCTGAGCGCAACAGTAGCCGCCGTGCCTGAAGATCTGAGAGAGCAGCCGCCGCAAATGACAGCATCACCGCGACCATTTGAGGCGATAAAGACATGCTCGACAGGTTTATTTCTCTAGCAGGCTATTCGTCAGTGGTTAATAATGTGTGAAGGCTCAGCTTCAAGCCAGGAATGAAGACGCGCCAGACGCATCCACTCACTGACTGGGCATCGCGTTTCGAAAACGAACCTGAGCTTCGACCGACTGGACAGACCCGACAACAACCGAATACATCCGAGACTGGCGTTATATTCTCCGAGGCACTGTTTTGCTGATAATTCGCACATTTTAATTTCGCCCTAATGACGGACACGTTGTCAGTCTTGTGCGCTTGATGCCGTGCATGCAAAACCTGAGTGAACTTAACAGGTAAACACAGTTTTACTTCGTTCTTGTGCttattgttgttttacttttGACGTTATTTTGCATGATGTGGCTATTTTGTGCATTTGTTTCGTCGTTTGATTGAATAttttcatgaactaataatgGTGCTAGATGAGGCTTATGGAGAAATCACAGGCTGGATGGCGCTTCGCATCCGCGCGCTGTCATCTCCTCACCGGGTAAAGTGAACGTCTCACCGGGGAGAAAGGCTTCAAAACCTGTTCGCGTAAGACTGCACTGAAACTTTAAGGATTCACGATGTCTAAAACGCTCAAGAGGAAGAAACACTGGTCTACTAAAGTGCAGGAGTGCGCCGTGTCGTGGGGAAGCGTCGGGGAGTTCGGGGATGTTGTGGAGATCCTCGGAGGCGCCGAGCTCGGGGAGTTCCCGTTTCTCGGTCAGATGAACTTGGACGTGCTGGTGTGTCATGTTGGGAGACTACCGTACTACGGGGATGTGTTACTGGAAGTGAACGGGACACCTGTCAGCGGGCTGACGAACCGAGACACGCACGCGGTGATCCGCCACTTTCGGGAGCCGATTCGAATTAAGACCGTCAAACCAGGTAAAGTGCTGAACTCTGATTTGAGGCATTATCTCAGCCTGCAGTTTCAAAAAGGATCAATCGACCACAAACTGCAGCAAGTGATCCGAGACAACCTGTACCTGCGCACCATTCCATGTACCACTCGGCTGCCCAGAGATGGGGAGGTTCCAGGAGTGGACTATAATTTCATCAGCGTGGGGGATTTTCGCATCCTGGAGGAGAGTGGATTACTGTTGGAGAGTGGGACATATGATGGTAATTTTTATGGGACTCCCAAACCTCCTGCTGAGCCCACCTTGGTTCAGCCGGATCTGGTGGATCAGGTTCTGTTTGAGGAGGATTTTGGCCCTGAAGTTCAAAGAAAGCGAACTACATCCGTCAGCAAGATGGACCGTAAGGACAGTGTTGTccctgaggaagaagaggatgAGGAACGACCACAGCTCCCAAACGGCATCCcagAGCGGACGGAGGAGTGGAGGAAAGCAGTGCCCAGTTACACTCAGTCCAGCGGTGCAGGAGGCAGCGGCACACTGGAGATCCGCACCTGGAGCTCTTTACCCAGAGACGACAGCCTGGAGCCCCTGCCCTACAACTGGGAGATGGCCTATACAGAGACCGGCATGGTCTACTTCATTGACCACAACACGAAGTCGACAACATGGTTGGATCCTCGTCTGGTGAAAAAAGCCAAGCCTCCTGAAAAGTGTGAGGATGGAGAGCTTCCATACGGATGGGAGGAGATTGATGACCCGCAGTACGGCACATATTATGTAGATCATATTAACCAGAGAACCCAGTTTGAGAATCCAGTCGTAGAGGCCAAGAGGAAACTGGGTCTGGACACTGCAGTGGCGACTCAAACCCAACAGAGGGCAGCACCTCCTCCAGGTGGAGCGGCTGGTACACCCGGATTCACTCGGGACCCGACTCAGCTGAAGGGGGAGCTCTATCACACGGCTCTCAGGAAGAGCCAGCAGGGCTTCGGCTTCACCATCATTGGAGGAGACCGATCGGATGAGTTCCTGCAGGTGAAGAACGTCCTGTCTGATGGCCCGGCCGCGCAGGACAACAAGATGGCTTCTGGTGATGTTATTGTGGAAATCAACGGCACTCTTGTTTTAGGAAAGACTCATGCAGATGTAGTCCACATGTTCCAGTGCATCCCAATTAACCAATACGTGGACATGGTGCTCTGCCGTGGGTACTCGCTCCCTCCTGATGTGGATGCAGACAGCGAGGACCTTCCACCTCCACCTCCACCTCCCACAGGAGAGATCGTCACAGCCGTGCCCCTCATCAACGGCCAGCCACTGCTTGTCAAAGGGGACGCCCTCCACGGCTCTTCCCAGGAGCTCCACTACGTCACCACAGATGCCAGCGGGCGCCCGGTGGTTGCTGCTCTTCCTGCGAGCAGCGCTGCCAACGACAGACCAGAAACAGGGATGCTGCAGCCGGAGCTGGTGAGCGTGCCAATCGTGAAGGGACCTGGAGGATTCGGCTTCGCTATTGCAGACTGTCCGCTGGGGCAGAAGGTGAAAATGATCCTGGACGAGCAGTGGTGCCGAGGCCTGCTGAAAGGAGATGTGATAAAAGAGATTAACAGGCAGAACGTGCAGACGCTGAGCCATGCGCAGGTAGTGGATATACTGAAGGATCTCCCGGTGGGCAGCGAGGTCAATCTGCTGGTGTTAAGAGGAGgTCAGACATCGCCTGTGAAGAGTTTAAGACCGAGAGGAGGGATGAGTGCCAGCACTGAGACTCTGGACCGCTGCCATGATATGATGGTTCCCCAGGCTTTGACCTATCATTCAAACACACTGCCGTGTAGCTCTCCCAAACAAGACGCTTCCCTTCACTATAGTAAACCCAAAGCCCTGACGGAGAGCATAGTACCTCAATATAAAGAGCTGGATGTGTTCATCAAAAGAGATCAGGAGACGGGCTTTGGTTTTCGTGTGCTTGGAGGAGAAGGTGCAGAACAACCAGTGTACATTGGTGCCATCATCCCCCAAGGGGCGGCTGAAAAGGAAGGCCGCCTGCGGGCTGGAGATGAGCTCATTGGCATCGATGGCATCACCGTTAAGGGTAAATCTCACAAACAAGTCCTGGACCTGATGACAAACGCAGCACGCAACGGACAAGTGCTGCTTTCAGTGCGCAGGAAGGTCATTTTCCGAGATGCCCTGGAGGATGTTGGGAGTGGAGCGTTGACCCTTGTGAATGGATCACCTCGGCTTCCGCGGATTCAGGTGCCAAGCGTCAAGGACCAGGAGTCGTTTGATATCACGCTTCATCGCAGAGATAACGAGGGCTTCGGCTTTGTCATTCTCACCTCTAAGAGTAAACCGCCACCGGGAGTGTGTGTTTCAGTGATTCCTCATAAGATCGGTCGAATAATCGAGGGCAGTCCGACTGACCGATGTGGACTGCTGAACGTGGGTGACCGTATATCCGCTGTGAACAGTCAGTCCATTGTGGAGCTCTCCCACAACGACATTGTTCAGCTCATCAAAGACGCCGGAAACTCAGTCACGCTCACCGTGGTTCCTGAGGACGAGTACAAAGGCCCGCCTTCAGGAGCCAGTTCAGCCAAACAAAGTCCAGCACCACAGCACAAGACCCTCAAATCCACTCAGGACGAGAGGTATAATTTGGATATGGATGAGATCAGGGACGAGCTTACATGGACGGAGTATAAAACGCCAAACAGGCAAGAGTCCAAACAGGGCTGTATTGCAGTTGAGCTGGAGCGTGGTCCTCGTGGTTTCGGCTTCAGTCTGAGAGGAGGAACGGAGTACAACATGGGCCTCTACATCCTGCGTCTGGCTGAGGATGGTCCTGCTTTACAGGACGGCAGGATACACGTAGGAGATCAGGTTGTGGAGATCAATGGCGAACAGACACAAGGCATCAGTCACACTAGAGCCATTGAGCTGATCCAAGCTGGAGGAAACAAAGTGCTGCTGTTACTACGACCACAAGCCCTGCTGCCAGAGAACAGTTGTGTGAGCTCCTCCACCGTGTGTTACTGCCCCCAGGAGCATCATCACTAACAGCCTCTGTTTTCCTCTAGGTCTTTTTTCTTTGGTTCTGCAGGAGATGTTATCCTTCCTGATCCGCCGGGATCCCACACTTCCAACATTCCTCTCAGTTCTCATCCAACATCCACCTCAGTGAAGAAGAGGACGGGCCTGACAGACGGCTCTTTAAATCCCTCTAAAGACAGCAAGAGGGAGAAACACACCAAAACACCAAACACCAGCTCGTCCAGAGTCTCACAGCAGCCGCGGCGCATCAAGAGTCGCTCCGCAGAGAATCTCCTTGATCTCGGAGATACAGAGAAATCCAAAAGCCCATCCAAAGCCAAAGACAAAGCTCACAGCCACAAAGAAAAGCTTCAACAAAGCACTCGAGACTCCCAGAAGAACAGATCATCCCGCCAGCACAGCCGCTCCGTCAGCCCTCAAAAGTCCAGGCGAGAACGTCAGGAAGTGGAAATTGGCGAAACCGAGGAAAGCCACTTGGACCAAAGGAAAAGTGGCACAGATAGGAGGAAAAAACGTGAGTCTGCGGTAAGGAAGCGAAATGAAACCCAAGAGAGAGAATCTGAGAGAAAAGTGAAGAGCAAAGAAGATGAAGAGGTCCAGCGAAAAGGCCAAGCTGAACTTGAAGGCACCCAAAAGAAGAAAAAGCAGAGAAATATAGAGATGCAAAATGGAGACACCCTTATATCCCCAGACAGGaagagcaaacaaacaaaggaTAAGGGATCTTTGAGGGATCAGAGGAAAGAAAACAAGAAGGAAATGATTAGAGACGGGAGCAAAAACAAAAGGAAAGGAAATGAGAGCGAAAACAGTAAAGACGACATTGACAGCACAGATGCGGCTCCGCTCTCCACCAGAGCGAGTCTAGTGTTTGACCACCCAGGACCCTTAAGTGAAGGCCTTTGGAAGGATCCGAGTTATGTTAGAATTCTCACTCGCGAGGAAGTGATGCGAGATGTTTTCGAGTAGATTGATGATGCTTTGGAAGAGAAGGTTGTAAGACCAGAAATATATGCTGGAATGTGAATGCTTCTAGAAAAGACACTGCAGTCGCGTTTGATCAGCTCATCATTAATATCTAGTGTCATTTAGTTTAAATCATTCatcagggctgcatgatattggagaaaaactgacattgcagtaCTTTATTTTTCTCTGAAACGCATTGCGATATTGAGTGTACTTTCACTAGATGGATGAATACCTTTAGTTGGGAAGAATTTGTCATTTTAGGTAGATTGGAATGACTTTGTATTGGGAGAGTACAtctgtttaaaatataaacaaatcaacCACAAGCGTTGATTAATagtaattcaattcatctttatttctatagcacttttacaatgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136726

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064380 lncRNA downstream 958452 46568134 ~ 46571429 (-) True XLOC_033127
TCONS_00064373 lncRNA downstream 1219870 46294361 ~ 46310011 (-) True XLOC_033123
TCONS_00064370 lncRNA downstream 1367296 46102214 ~ 46162585 (-) True XLOC_033120
TCONS_00065222 lncRNA downstream 1600706 45923942 ~ 45929175 (-) True XLOC_033118
TCONS_00064365 lncRNA downstream 1650741 45875242 ~ 45879140 (-) True XLOC_033117
TCONS_00064398 lncRNA upstream 38364 47835353 ~ 47838372 (-) True XLOC_033139
TCONS_00065223 lncRNA upstream 182316 47979305 ~ 48051590 (-) False XLOC_033141
TCONS_00064401 lncRNA upstream 182316 47979305 ~ 48061524 (-) False XLOC_033141
TCONS_00064756 lncRNA upstream 249297 48046286 ~ 48061659 (-) True XLOC_033141
TCONS_00065224 lncRNA upstream 1117879 48914868 ~ 48949493 (-) False XLOC_033149
TCONS_00064392 mRNA downstream 23530 47484084 ~ 47506351 (-) True XLOC_033136
TCONS_00064390 mRNA downstream 282933 46981486 ~ 47246948 (-) True XLOC_033134
TCONS_00064389 mRNA downstream 588636 46878889 ~ 46941245 (-) True XLOC_033133
TCONS_00064388 mRNA downstream 654571 46843733 ~ 46875310 (-) True XLOC_033132
TCONS_00064387 mRNA downstream 668205 46843592 ~ 46861676 (-) False XLOC_033132
TCONS_00064396 mRNA upstream 12766 47809755 ~ 47840465 (-) False XLOC_033139
TCONS_00064397 mRNA upstream 16898 47813887 ~ 47838481 (-) False XLOC_033139
TCONS_00064399 mRNA upstream 72408 47869397 ~ 47953829 (-) False XLOC_033140
TCONS_00064400 mRNA upstream 75414 47872403 ~ 47899405 (-) True XLOC_033140
TCONS_00064402 mRNA upstream 271706 48068695 ~ 48094342 (-) False XLOC_033142
TCONS_00064391 other downstream 373465 47156302 ~ 47156416 (-) True XLOC_033135
TCONS_00064371 other downstream 1277941 46168017 ~ 46251940 (-) True XLOC_033121
TCONS_00064372 other downstream 1301649 46228117 ~ 46228232 (-) True XLOC_033122
TCONS_00064360 other downstream 3249667 44254721 ~ 44280214 (-) True XLOC_033114
TCONS_00064352 other downstream 3639454 43879375 ~ 43890427 (-) True XLOC_033109
TCONS_00064408 other upstream 583256 48380245 ~ 48381223 (-) True XLOC_033145
TCONS_00064412 other upstream 815045 48612034 ~ 48612150 (-) True XLOC_033148
TCONS_00064417 other upstream 1319030 49116019 ~ 49159094 (-) True XLOC_033153
TCONS_00064440 other upstream 2096499 49893488 ~ 49902140 (-) True XLOC_033166
TCONS_00064447 other upstream 2338330 50135319 ~ 50135437 (-) True XLOC_033171

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_13350921_13376832.mRNA True 4664 mRNA 0.49 18 CI01000340 13350811 ~ 13377534 (-)