RNA id: TCONS_00064507


Basic Information

Item Value
RNA id TCONS_00064507
length 2430
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_033207
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 53394125 ~ 53426773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAGTCCTCATTTGAGCTGTGTGGCTGCAGTAAAGCGTCTCTCACACCATGTTTATGCTCTTCTTTCTCACAGCTCTCCTGCTTCGACTCGATTCAGTTGATGGATACCGCAGCGCACTAAATGATTTTCAGCGGTCGGAGGGAAGAGAACTGGTTCTGAAATCCTGGAACGTGAACCGACTAACTGAACTTCCGGGAGTCACACTGGAGGATTGCGCTAAACGCTGCACAGAGAGTCCAGAATGCAGAGCTTTCAACTATGAGTTTCGTCCATCATTGGTGTGTAAACATCTGCCCTGGGTGGGCGACGGAGACAATGCAGACGTGAAGAGAAACGTGAACTGTGACCTCTATGAGATGAAGGTATATGTAAGGAAATGCATTGTGGGTAAAGGAGAAGACTATCGAGGGAAAGTGTCGACAACTACAAGTGGACGAACATGTCAACAGTGGTGGTCAAAATTCCCTCATGACCACAGATGGACTCCGTCTGCGACTAATGGCCTGGAACTGAACTACTGCCGAAATCCAGACGGCGACCGCATCGGCCCCTGGTGTTACACCACTGACCCCGAACGCAGATACGAGAGCTGCAATATCCCTCAGTGCAAAGACGAGGTGTGCATCACTTGTAATGGTGAAGACTACAGAGGGCAAGTGGATCACACTGTCAGCGGAAAAGAGTGTCAGAGATGGGACCAACAGTTTCCACATCAACACATCTACCAGCCGGAGAAATATCCGGATAAAAGTTTGGATGATAATTATTGTCGCAACCCGGATGCGTCTCCGGTGCCCTGGTGTTACACCACTGACCCAACAATGGAGAGAGAGAGCTGTGATATAAGCAAGTGCCCTGAATTTCCCAAGCGTCGTCTTCGCTCCAGCTACACCACTAACTGCTTTCGGGGGCGAGGCGAGGATTACAGGGGCAAAGTCAACGAAACAACCTCTGGAATCCCTTGTCAGCGTTGGGATGCCCAGAAACCTCACGAACACCCATTTTTCCCTAAAACCTACGAGTGCAAgggtttagAGGAGAACTACTGTCGTAACCCGGACGGCTCTGAAGCACCGTGGTGTTTTACGTCTCTGCCGGAGATGCGGACGGCGCTCTGCCTGCAGATCAAACGCTGCGCTGATGACATCGAGGCTGAAGATTGCTATAATGAAATCGGCAAAAACTATCGAGGTGTGGTCCGCAAGACCCGGAAAGGAATCCTCTGCCAGAAATGGAGCATCAACACACCTCACAAAACCAAGATAAAccccaaaacacacccagaagCAAACCTTACGGACAACTACTGCAGGAATCCAGACGGAGATCATCACGGCCCCTGGTGCTACACCTCTGACCCCAAGACTGAGTTTGACTACTGCGCCATCAAGCAGTGCGCTGGAGAGAAAGTGCCAATCATCGGTCCAACAACCGAGGTTGAGTTTAATGAGTGCGGAAAGCGTGAAGACCGGCTGAGGTCCAGGTTAAGAATCGTGGGCGGCACACCTGGAAACTCCCCCTGGACCGTCAGCCTCAGAGATCGgAAAGGGAATCACTTCTGTGGAGGCTCTCTGGTCAGTTCTGAATGGGTCATCAGCACTAAACAGTGCTTCTCATCCTGTTATGTGGACCTGACGGGATACACCGCTATGATGGGCACCTTGTTTCGTGACCCAAAAGAGGGAGAACCAGACCTACAGAGGATTTCTCTCACCAAAATCGTCTGCGGCCCTTCTGAATCCCACCTGGTCATGCTGCAGCTGGAGACTCCTGCTCAGTTTAATGAGCGCGTGTCCCAGATCTGCCTTCCTCCCGAGCGCTACATCGTTCCTGATGGGACCATCTGTGAAATTGCTGGATGGGGAGAAACTAAAGGAAAGGGAGATGAAACGGTGCTGAATGTGGCTCAGATGCCGGTGCTCAGCAATAAGGACTGTAACCAGTACTTCAAGGGCCGCGTGCGTGAGAATGAGATGTGCACCATGGCATTCCAGGCTGGAGTGGGAGCCTGTGAGAGGGATTACGGAGGCCCGCTGGCCTGTCAGAACAGTGACTGCTGGGTCCTAGAGGGAGTCATTATTCCCATGCGCCGCTGTGGACACGCAGGACAACCCAACATCTTTATCCGCGTCTCGGTTTATGTGGACTGGATAAAGAAAGTCATGGAGATGACCTAACTAACAGAGAAATTCATCTGCTCATATATAAAGTAGACAGAATGTAATATACTTAAAACTTAATATACCTTTTTTATGAATATGCAAGCATTTTGTATCATTTAGGAGATTAATTGACTTAATATTCAAGTTTGCAGTTGtgaaacatataaatatacatgtgcACATATATGTACACTTAAACTAACACCACAGGTCTGAGTTTTCTTgaattttgtaatatttctaatgttaataaagtgttaaaatgg

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006508 proteolysis biological_process
GO:0030282 bone mineralization biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04014 Ras signaling pathway
ko04068 FoxO signaling pathway
ko04020 Calcium signaling pathway
ko05200 Pathways in cancer
ko05223 Non-small cell lung cancer
ko01001 Protein kinases
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-020806-3 Predicted to enable serine-type endopeptidase activity. Acts upstream of or within bone mineralization and inflammatory response. Is expressed in digestive system; margin; and yolk syncytial layer. Used to study inflammatory bowel disease. Orthologous to several human genes including MST1 (macrophage stimulating 1).

Ensembl:

ensembl_id ENSDART00000162791

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064500 lncRNA downstream 111552 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064758 lncRNA downstream 136057 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064474 lncRNA downstream 1159406 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064759 lncRNA upstream 184342 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 738159 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 738159 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00065241 lncRNA upstream 738159 54164932 ~ 54174073 (-) True XLOC_033212
TCONS_00064516 lncRNA upstream 750300 54177073 ~ 54180647 (-) False XLOC_033213
TCONS_00064506 mRNA downstream 2398 53373498 ~ 53391727 (-) True XLOC_033206
TCONS_00064503 mRNA downstream 59866 53304977 ~ 53334259 (-) False XLOC_033205
TCONS_00064504 mRNA downstream 65066 53306446 ~ 53329059 (-) False XLOC_033205
TCONS_00064505 mRNA downstream 67704 53309832 ~ 53326421 (-) True XLOC_033205
TCONS_00064501 mRNA downstream 111530 53273840 ~ 53282595 (-) False XLOC_033204
TCONS_00064508 mRNA upstream 76500 53503273 ~ 53885514 (-) False XLOC_033208
TCONS_00064509 mRNA upstream 636259 54063032 ~ 54078623 (-) True XLOC_033209
TCONS_00064510 mRNA upstream 666284 54093057 ~ 54111928 (-) False XLOC_033210
TCONS_00064511 mRNA upstream 666732 54093505 ~ 54107269 (-) True XLOC_033210
TCONS_00064512 mRNA upstream 690231 54117004 ~ 54126463 (-) False XLOC_033211
TCONS_00064499 other downstream 114195 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064492 other downstream 361014 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064491 other downstream 470636 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064464 other downstream 1852637 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 2637677 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064524 other upstream 1079685 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 1080332 54507105 ~ 54507178 (-) True XLOC_033220
TCONS_00064531 other upstream 1388148 54814921 ~ 54815037 (-) True XLOC_033225
TCONS_00064542 other upstream 2120362 55547135 ~ 55547270 (-) True XLOC_033236
TCONS_00064543 other upstream 2128489 55555262 ~ 55555396 (-) True XLOC_033237

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_16184729_16192901.mRNA True 2538 mRNA 0.45 14 CI01000340 16184043 ~ 16192901 (-)