RNA id: TU3308


Basic Information

Item Value
RNA id TU3308
length 608
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G2367
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7126802 ~ 7127409 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttaattaaaaaaatgccaaaaaatgccaaaacaattGACAAACCGTTgacaaaagtgtagaaaaagaataacaaaatttcgacccagaaaaacacaaagtttcatggtcgacgggaagacaagaCAAGGGCTAAAACAGATTGACATATCCAACTTAAaatgatggttcggagtaatttcaccctagggtcctttgcaccatgacctcgagccaaacgcccccccagaagcttttttcacctgggtctaacattgggagagttagctagagtagcgttatcagctgaaaagcttagcacaggggctaatggacccacgtttgtatctcgtaagttaccccactaataatgcccgaaatgataccaaacttctacactagtacaaataggttatgctctcataaaacgatggattggaaagtttgtaagtacaccagaagtttatgtaaataacacttgcctgctggcttctgctctctgctgttgttgctgctgccggcagttagacgagtgcttagggaccgtctacaaattacaacaccgaaaagagatgcaacaaaaatatttattaatttaatgattaaataaggtaatgtctccaaacttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3303 lncRNA downstream 40517 7085358 ~ 7086285 (-) True G2362
TU3300 lncRNA downstream 45334 7081247 ~ 7081468 (-) True G2360
TU3285 lncRNA downstream 123795 6999171 ~ 7003007 (-) True LOC120571633
TU3276 lncRNA downstream 149165 6948269 ~ 6977637 (-) False G2342
TU3362 lncRNA upstream 39023 7166432 ~ 7167827 (-) True G2392
TU3358 lncRNA upstream 97931 7225340 ~ 7240128 (-) False commd1
XR_005640135.1 lncRNA upstream 136282 7263691 ~ 7268389 (-) True LOC120564702
XR_005640658.1 lncRNA upstream 144410 7271819 ~ 7276543 (-) True LOC120568064
XR_005640671.1 lncRNA upstream 306507 7433916 ~ 7441067 (-) True LOC120568185
XM_039820724.1 mRNA downstream 109143 7002504 ~ 7017659 (-) False LOC120571633
XM_039810502.1 mRNA downstream 187815 6889288 ~ 6938987 (-) True LOC120565104
XM_039803634.1 mRNA downstream 250565 6808752 ~ 6876237 (-) False vps54
XM_039823631.1 mRNA upstream 13325 7140734 ~ 7155323 (-) False zgc:66455
XM_039822887.1 mRNA upstream 13325 7140734 ~ 7155323 (-) True zgc:66455
XM_039811084.1 mRNA upstream 31461 7158870 ~ 7223862 (-) False b3gnt2a
XM_039811094.1 mRNA upstream 31461 7158870 ~ 7223862 (-) True b3gnt2a
XM_039811112.1 mRNA upstream 31461 7158870 ~ 7223861 (-) False b3gnt2a
unassigned_transcript_11 other downstream 83784 7042947 ~ 7043018 (-) True trnae-uuc_9
unassigned_transcript_10 other downstream 84634 7042097 ~ 7042168 (-) True trnae-uuc_8
unassigned_transcript_9 other downstream 87249 7039482 ~ 7039553 (-) True trnae-uuc_7
unassigned_transcript_8 other downstream 88219 7038512 ~ 7038583 (-) True trnae-uuc_6
unassigned_transcript_7 other downstream 89846 7036885 ~ 7036956 (-) True trnae-uuc_5
TU3357 other upstream 97931 7225340 ~ 7240128 (-) True commd1
XR_005640861.1 other upstream 204547 7331956 ~ 7372558 (-) True LOC120569296
XR_005640913.1 other upstream 430358 7557767 ~ 7557898 (-) True LOC120569612
XR_005640903.1 other upstream 444912 7572321 ~ 7572457 (-) True LOC120569585
TU3830 other upstream 612415 7739824 ~ 7763948 (-) True G2752

Expression Profile