RNA id: TU5606


Basic Information

Item Value
RNA id TU5606
length 2479
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G4098
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13408732 ~ 13422841 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGAAAGATGACCAAAAcattgaatttatttatttggacctagaaaaactaaaagttgcatggtcgtcaggaagacaacacaagcgtTAAGGACCTCAAGGGGTTCCTGGACCACACATCAGGATCCTCAAAGATGGGAAACTAGGCTGTTCAGAACCACACTGGGCTGCATGATAATATTACTGTTCAAGTTCATGAAACCTCTCGCAACCCCTTCTAGCTGATACCAGAATACGTTAGAGGATTTGGctctgaaaacaacaacaatgaaaaCTCATTAAACTCACATTACATTGAATTTACATTCAGACAACATAgcaaaaagtgcaatattttttcaagtttttgtgaCACGTATAAATTAGTTTCAGGGGTGTTcaatagttgttgttttttttccattatttaattagaaaaaaaaaaatgacatccaCTACCAGACAAAAACTTTTACACCGTTCTGTCAGGGGTCTATGGCTTATTTGTTACTTGAGGTACCCTGAGGAGTGTTCATTGTGAACAGACACAGTTGAGTTCAACATTGtcactcaaaatgtaatgtgtacCCTGAATGTATAGCAAACACGTTGAAAGCTTTTCTTACCTCTTAATAGTTGCAtagactttttttaaacctccatCTGTTGCATTAGATTCAAGTGAACTTCATTTGTCTGGTTTATTTGCTACATTTATACAGCATGTCCATAATGCCATTTTTCAAGAACCCCTGTCACTCTTCCACATGGGTGATCACAATGCTTATTTCTCAAATGAGGATGGCATGGGAATCCTAGATCAGTACAGAAATCCATAAATATCAAATTCCCTGCCACCAAATCCCTTTCACCCGTGGGATTTCTCATTGCATCTGTAGTAGTCATGGTCTTAACAAGGTGGTTCAGGCTTCTTCAAGTCTGTCCAGTATTTCACCAACTCTTGTGAAGAGCCAAGGATGTAGGTGATGATCTTGGAGTATTCACAGCGATCATATCTTTTGTTATAGGCCTTGAACTGGGAGGGATTTGGGGGTGATGTTGGCCCAAGTCCTAGCTTCTTCATGCACATTCCAATATAAGCGTCCTCTATGTTAAAGGGTTTGATTGATTTTGAGATCTCCACAAATTTCTCTGGAAGATCGTTGGAGAAGACATATCCCATGCCCAGCGTGTAGGTCGGGTATTGGGGATCTGGGTACATCTCCTCAGGGACGTACCACTTGGAGTTCTTTGAACGGATGACCGGCCTGTTCCACATAAGCATCCCGGTCAGGTAGTTCAGCTTGGGGATGCCTGGCTTCTGTAGCATCATCACTAGATTGTCAATGTTCAGAAACATGTCCGAATCAATCTTCATGGCGTACGCCGCTGTGCGGCAGCGTGTGGCCAGCCAGTCCATGATGACCATGGTTTTGATGGTCAGATTGAGGTAAGTGTCCATGAAGTCACTCTGGATCAAGTCATGGTGCTGTAGGTTCTCCTGTTTCAGCGTCTCCTGCAGCTGCTCGGCAGCAGGTCCTCCAGAGAGGCCCAGCATGAACAGAGTTAGCACCACCTCGCCCCGAACCAGGCTGTCATTGCCCCACGTCTGCCGGATGGCGTCCCGAGCTTCCACGTTTGTTGGTGCCACTGGAACCATCAGGACCAAGAAAGGGGTCTTGGTCTTGCACACCTCTTTGTTATCCATGATAAAGTGGTAGTTGTGTGGGTGGGCTTGATGGAACTGAGTACCTGTAGGAGGCACAGCAGGGGATTCTGTGGCTTCATAGATTTCATTTGGTTTACCTCTGTGTTTTGGATGGACACGATAAGGAGGAGGTAGATTAACCTGATTGGTCCGATTGAAAAACCTCTGGTAGTGCTCACGGAGTGGAAAGCTCTGCAACCATGACAGAGAGCTGCTTGACGGAGCGTAACACAAGATGAAGAGCACCAGACAAAGCAGGAGCAGGAACTTGAACAAGGAGTGATACAAAGGCTTCTTCTGATGACACAGGTTCACAGCAAGTAgtctaaaaaTCATGTGAAGCAGTGACACCATGCACCTCGGCGGAGAATAACCCCAGGAGTCGCCGTGATCTAAGCGGAGACGCGGGCAGCATGGACAACAGGACGCGGACCTCCGTCTTGAGTGTTCTTCGGAGACGGAGAGCTGACACGATGAAGACCCGGAGGGTACTGGGAGTGGGCGGCTAGGTGTGGCTGGGAGGGTCGTATGTACCTGGTAATCTGGGCGGGGCTTAAAGAAGGCATAAAAGACGGCTTTCCTGGGAGTCTCACCCCCTCTCAGCTGGTCCTCCTGCCATCATCCACCATTTTGTTCCTTGTTTGGTTTGTTACACCttacaacacacatcacaccatTTATTCACTCATCCACACATGGCAAACACAACTGATGTCTACTACATTTACACATCCCACTATTACCTTTATGTTTAGTTAATTTGTGTTATTAGTATATTtagttaaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5553 lncRNA upstream 136558 13183993 ~ 13272174 (+) False LOC120568539
TU5552 lncRNA upstream 213075 13183993 ~ 13195657 (+) False LOC120568539
TU5490 lncRNA upstream 251912 13101704 ~ 13156820 (+) True G4008
TU5669 lncRNA downstream 120134 13542975 ~ 13610712 (+) False G4141
TU5675 lncRNA downstream 120134 13542975 ~ 13610712 (+) False G4141
TU5668 lncRNA downstream 186084 13608925 ~ 13682671 (+) False G4141
TU5672 lncRNA downstream 186084 13608925 ~ 13657374 (+) False G4141
TU5673 lncRNA downstream 186084 13608925 ~ 13663519 (+) False G4141
XM_039814114.1 mRNA upstream 165108 13232317 ~ 13243624 (+) True LOC120567194
XM_039814120.1 mRNA upstream 165108 13232317 ~ 13243624 (+) False LOC120567194
XM_039814125.1 mRNA upstream 165108 13232317 ~ 13243624 (+) False LOC120567194
XM_039816113.1 mRNA upstream 212991 13183961 ~ 13195741 (+) True LOC120568539
XM_039790520.1 mRNA upstream 318251 13073816 ~ 13090481 (+) False pla2g6
XM_039799360.1 mRNA downstream 55012 13477853 ~ 13483849 (+) True LOC120558382
XM_039799268.1 mRNA downstream 62418 13485259 ~ 13494509 (+) True akap8l
XM_039799191.1 mRNA downstream 73800 13496641 ~ 13519511 (+) True LOC120558207
XM_039799199.1 mRNA downstream 73812 13496653 ~ 13519511 (+) False LOC120558207
XM_039799167.1 mRNA downstream 73836 13496677 ~ 13519511 (+) False LOC120558207
TU5494 other upstream 291340 13107298 ~ 13117392 (+) True G4009
TU5477 other upstream 318272 13085123 ~ 13090460 (+) False pla2g6
unassigned_transcript_57 other upstream 428624 12980015 ~ 12980108 (+) True trnai-uau
TU5353 other upstream 612365 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_52 other upstream 722660 12686000 ~ 12686072 (+) True trnar-ccg
XR_005639123.1 other downstream 104269 13527110 ~ 13536062 (+) False LOC120558420
XR_005639122.1 other downstream 104269 13527110 ~ 13536062 (+) False LOC120558420
TU6093 other downstream 1229169 14652010 ~ 14655052 (+) True G4468
TU6115 other downstream 1288848 14711689 ~ 14713213 (+) True G4481
TU6377 other downstream 1731398 15154239 ~ 15183169 (+) False grin2ab

Expression Profile