RNA id: TCONS_00068823


Basic Information

Item Value
RNA id TCONS_00068823
length 3806
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id XLOC_033694
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24457029 ~ 24464316 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGACACTTTTGTACAAGCTTTATGCATCGTTCCTTTAATTGATACATTATGTACATCCCTTTCTTTCATAAATCAGGAAAACTTTTCTTTACATCTTTACAAAGTTCCTGTGTATTGAGGaaatgaaagaaaaagagaaaagggggaacataaaaaaaaacggtTTTAAACAGCTTAAGAAAACCAAGTACAACGATTTCAGACTCAAAGAACCAGGAGATCACTGCAACCAAACAGGTAAAGCAAGGTCAGATTTGCCATGCTCAAAACCTCTTTTACATACTCCTAATCCGTTCTACCCAGCCCTTATTATCATACCAAGCTCAGCCCCTTTTATGGTAACTGACCCCGCCCCCCATGTGTGGCTGCACATCATTTCCCTGCTGTGCTTTGTGTGGGCTTGTTTTTACAGTAGCAGGCAGCCAATGATTGAAATGTGTTCAACAGCCTAAAACAGCCAACTTAAAACTGATAAACATGGGTAtaaagcaaagaaagaaaactatcACTGCCATCTTTTAAGTGCCATACATTTCCAAAGTATTTTCAGGGATTTACCCATAAATTAATggtaatttacaataaatactaAACCCACCAGCACTTTGCAATGTTTTAAGAGCATCCAATAAGTGCTAAGAGGATGCAGGGACTCTGAAAGTTGCTTTTGCTCTGACTGGCACAAATAGAAGCGGTTTGTAGTCAAAATTGTTTCTCAAAGTGTATCgttattgtgtttgtttttgtaaacattGTATGTATATTCATATAGTATCTGTTACAAAATGTTCCCCAAATgctatttacagtaaattacactTTACAACTttacatatattaaaatgttaataaaaaggttaattgtttttgtttttcaagaaAAATCATAAAAGCTTTGTTAGTATGAACCTGTGCGTATTGAGCCACTTGTGAAACTGGTGTTGATTTGTCTGTTTTGCTTACTGTCACAGATTGTTGGAGATTGTGCACCTTGTGAATCCGGAGATATCTGAAAACAGCCAATGGTTCAGAGCAATGAGGCAACTCTCAGAGACCATGACCACTCACAAAggttttttcacttatttttgccCGCTTTGTACCCCTACAACATAAGAGGAATGCAAGTAAATGTGTTAGTTGTAATTAGAATGAAGGaacaaaactatatataaaaagaatGAGAATATACACAAACAAAAGAAACTTCACATTCACACTTTGTCAGGCCTTGGCTTGCCTGTGGTGATGTTGCTGTGCCAATACTAATAACATCTTAGCGACTGTCACCAGTAAAGTATGAGGGATTGAACATCAATGCAGCATTTGAACATTTTTATAATCTCACGGATCATGTTcgtttctctttttttccccccaactGTGATACTTTGTATTATTGCTTGATAAAATGGCACATAGGCTTGACTTCCAAATGAGGTCTACAAAGATGAGTTGTGGCAACATCTTAAAGACAAACGGCAAAAGAAGGAAATATACTCAACTTTGGCAAATTTAACTCCTAAAAAATACTGTTGATACATTGTAGTGGATCATAAGAACAAGAAACTaaacacttatttaaaaatatagatatatcgttgaacacaaaaataaaataaaggaaggAAAATACAGTTAGGGGAGTGCTATCAACCTGGAAAATGAAAGGAGAAGGAATCAGCTTCACACTTTGGTGTCTTGTTCCATACATTATCTAATGAGCGACAATGATGTAGCAAGTCCAtccaccagtgtggatcttcccTGACTCCCTTCTCCACTGTTAAGTGAAACATTCTTAGCAGCCATCTGTTTCATGCAGCTTACCAAGGTCAATCTGAATGCCTTTTCATCAACTTTTCTTTCAAACGAACACTAGAAATATATATACAAAGTATGCACTTTATTTctgtgttgttgtgtttttttctttttttttatgactTGGGTAAAACCCCAGTTTTTTTTCCTTGCATAACAACTTTTTCAAGTTCTGTCTTGCTGCTCCAACTTTCAAAGACCAGCCAATCAAGTCACCAGTCTAAACCAGCATATCACACAAACTGTACACATACATCCAATTTAATTGAGCCTTTAGCATGTGCAAAACTAGTTGCATGATCTGGTCAACAGCTTAGTTAACCGCAAGCAGTGATCATGGTGTTCTTGCACTTGCTTGCGATACAGACAGGCTCTCTTCAATCTGCGAACAGCACATGCACCTTATACATCCCTTATTCCATGCTGATTGCATTCAGAATAATAAAGTGAGGATTTTCAAGGCAGTCGCACTACAGAAGAAGATTAACACTCATAGCAAAAGACCTCAAGTACATCAAACACTGTTCAAATCTGGATCTATATGTAATACATTGCTGATCGCCGTATACATTCACTTCTGCCAGCACTGTGGTAAATCCCGTTAAGacatttgtggattttttttttttatgtgggatTGACTACAACTTCATTCTCCTGGTATATTTTCATACTGTTCATGTACTGATTGTTTTTGGCTTGCTTTGGCCACACAATCACAAGTGAGTGTGAACTTTAGCCTGTTTGCTTTGGGTTTACACGGTTGAAAATCACATCACAGATTTGATCTGCCATTTAATCTTTCTTCTTAAAGATGCTAGTGCATTCAAATACAGCTTAACTAGGCATTTTAAGGGAGACAGGTGAATGCTACGTCCAATTTGACTGGCACACGCAACTAGCAAAGTTGTATCTAGGGAAATGTATTTTTGATGCCTTATTCATTTCAACTCGCATAGCTAAAACAGGGACATCCTCCCAAGTAAACCGAGAAGCGTCACATATCTGATCTCTAGTCAAAGCATCGCATCATTTTCAAGGCCTTCTACTGATAAAAAGGACATCTCGCAATATCCTAAAACAATTTACTGAATGAAAatgaacatacatttaaaaaaagctccACTTTTAAGACTTGCCGTGTTAAAGATGGTATTTGTCTTGCTCGTTTTTCATTCAAAGACGTTTCATGCAACAACAATTTCTTCGAACAATGAAACACACGTATTTGTTTATATGTTCAGTTAAAAAAAGACGCTTGTTTTACATAGTTTTTAAATATACTTCTTTACCAGGGCAGGCACCGTACGCACAAACCAGGTACAGAGGCATGCCACATACTTGCATTGCTTTTGCATTCTACTATTGGCAGCTGTGATGTCATTGAAGCAGCAAGCTGGTGGGTAGTCCTATTATTTAGTTGACTCCACCCATCTCACGTTCTAAACCACACCCACGACTCTCCACACTGCTACTGTGACATCACAGAGGGAGGGAAATATGGGGATAGTACAAGCTACAATGGAGGGGAAAAGGCAGCGCAACAAGACTCCGTGGCGCATGCAGAGAGGGGTGTGGGTTTGAAGGGAGGGAGAGGTCTGGCCCAGGGTTGCAGTCAGATTTTTGGATGGGGGTGGGGTTAAAGTCAAGGAAAACTGGCAATGTtcatgttctttttttcttttttatgcacTACAAGTTACttctatgtattttttaaatcacatttagtTTCTTAACTTTATACAACATTATGTCACAGATGAGGCTCATTGTGGTTTGAATCTCTCCCTCTGCTGGTACTGTGATAGGAAGATAGAGACGGAGAGAGATTATGgataatgcaTTGGAGGAGCAATATCAGACTGGGAAGAAATTCAGTCAATTTGCAAGAGAAAGGAGATAAATACTCTGTGAAGCTGTACAAATAAACAAGGACAGAACTGAGGTCTGGTGTCTACAAGATGAAACATACGCAGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065905 lncRNA upstream 242024 24210071 ~ 24215155 (+) False XLOC_033690
TCONS_00068572 lncRNA upstream 244619 24210451 ~ 24212560 (+) True XLOC_033690
TCONS_00065903 lncRNA upstream 256595 24196542 ~ 24200584 (+) True XLOC_033688
TCONS_00065897 lncRNA upstream 366942 24087253 ~ 24090237 (+) True XLOC_033681
TCONS_00065888 lncRNA upstream 436061 24018851 ~ 24021118 (+) True XLOC_033678
TCONS_00068824 lncRNA downstream 209677 24673993 ~ 24678634 (+) False XLOC_033701
TCONS_00068825 lncRNA downstream 212757 24677073 ~ 24678634 (+) True XLOC_033701
TCONS_00068826 lncRNA downstream 216906 24681222 ~ 24694747 (+) False XLOC_033702
TCONS_00068827 lncRNA downstream 226411 24690727 ~ 24694747 (+) True XLOC_033702
TCONS_00068573 lncRNA downstream 251161 24715477 ~ 24715800 (+) True XLOC_033703
TCONS_00065910 mRNA upstream 3425 24391129 ~ 24453754 (+) False XLOC_033693
TCONS_00065909 mRNA upstream 58750 24390939 ~ 24398429 (+) False XLOC_033693
TCONS_00065908 mRNA upstream 58754 24390939 ~ 24398425 (+) False XLOC_033693
TCONS_00065911 mRNA upstream 59051 24393678 ~ 24398128 (+) True XLOC_033693
TCONS_00065906 mRNA upstream 100010 24251367 ~ 24357169 (+) True XLOC_033691
TCONS_00065912 mRNA downstream 27650 24491966 ~ 24498893 (+) False XLOC_033695
TCONS_00065913 mRNA downstream 27792 24492108 ~ 24508677 (+) False XLOC_033695
TCONS_00065914 mRNA downstream 29983 24494299 ~ 24505418 (+) False XLOC_033695
TCONS_00065915 mRNA downstream 32578 24496894 ~ 24502740 (+) True XLOC_033695
TCONS_00065916 mRNA downstream 56202 24520518 ~ 24523743 (+) False XLOC_033696
TCONS_00065907 other upstream 193440 24263623 ~ 24263739 (+) True XLOC_033692
TCONS_00065899 other upstream 340035 24114876 ~ 24117144 (+) False XLOC_033685
TCONS_00065895 other upstream 380358 24076711 ~ 24076821 (+) True XLOC_033684
TCONS_00065894 other upstream 382204 24074861 ~ 24074975 (+) True XLOC_033683
TCONS_00065893 other upstream 384695 24072381 ~ 24072484 (+) True XLOC_033682
TCONS_00065919 other downstream 64098 24528414 ~ 24530669 (+) False XLOC_033697
TCONS_00065954 other downstream 578694 25043010 ~ 25043080 (+) True XLOC_033713
TCONS_00065956 other downstream 580866 25045182 ~ 25045246 (+) False XLOC_033712
TCONS_00065957 other downstream 581094 25045410 ~ 25045479 (+) False XLOC_033712
TCONS_00065958 other downstream 581532 25045848 ~ 25045974 (+) False XLOC_033712

Expression Profile

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