Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00065916 |
| length | 878 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | XLOC_033696 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 24520518 ~ 24527246 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080722-46 | Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Orthologous to human TRIM60 (tripartite motif containing 60). |
| ensembl_id | ENSDART00000173604 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00068822 | lncRNA | upstream | 56202 | 24457029 ~ 24464316 (+) | False | XLOC_033694 |
| TCONS_00068823 | lncRNA | upstream | 56202 | 24457179 ~ 24464316 (+) | True | XLOC_033694 |
| TCONS_00065905 | lncRNA | upstream | 305363 | 24210071 ~ 24215155 (+) | False | XLOC_033690 |
| TCONS_00068572 | lncRNA | upstream | 307958 | 24210451 ~ 24212560 (+) | True | XLOC_033690 |
| TCONS_00065903 | lncRNA | upstream | 319934 | 24196542 ~ 24200584 (+) | True | XLOC_033688 |
| TCONS_00068824 | lncRNA | downstream | 150250 | 24673993 ~ 24678634 (+) | False | XLOC_033701 |
| TCONS_00068825 | lncRNA | downstream | 153330 | 24677073 ~ 24678634 (+) | True | XLOC_033701 |
| TCONS_00068826 | lncRNA | downstream | 157479 | 24681222 ~ 24694747 (+) | False | XLOC_033702 |
| TCONS_00068827 | lncRNA | downstream | 166984 | 24690727 ~ 24694747 (+) | True | XLOC_033702 |
| TCONS_00068573 | lncRNA | downstream | 191734 | 24715477 ~ 24715800 (+) | True | XLOC_033703 |
| TCONS_00065913 | mRNA | upstream | 11841 | 24492108 ~ 24508677 (+) | False | XLOC_033695 |
| TCONS_00065914 | mRNA | upstream | 15100 | 24494299 ~ 24505418 (+) | False | XLOC_033695 |
| TCONS_00065915 | mRNA | upstream | 17778 | 24496894 ~ 24502740 (+) | True | XLOC_033695 |
| TCONS_00065912 | mRNA | upstream | 21625 | 24491966 ~ 24498893 (+) | False | XLOC_033695 |
| TCONS_00065910 | mRNA | upstream | 66764 | 24391129 ~ 24453754 (+) | False | XLOC_033693 |
| TCONS_00065920 | mRNA | downstream | 4687 | 24528430 ~ 24571456 (+) | False | XLOC_033697 |
| TCONS_00065921 | mRNA | downstream | 5123 | 24528866 ~ 24572034 (+) | True | XLOC_033697 |
| TCONS_00065922 | mRNA | downstream | 49978 | 24573721 ~ 24575938 (+) | False | XLOC_033698 |
| TCONS_00065923 | mRNA | downstream | 49978 | 24573721 ~ 24582259 (+) | False | XLOC_033698 |
| TCONS_00065924 | mRNA | downstream | 51081 | 24574824 ~ 24607165 (+) | True | XLOC_033698 |
| TCONS_00065907 | other | upstream | 256779 | 24263623 ~ 24263739 (+) | True | XLOC_033692 |
| TCONS_00065899 | other | upstream | 403374 | 24114876 ~ 24117144 (+) | False | XLOC_033685 |
| TCONS_00065895 | other | upstream | 443697 | 24076711 ~ 24076821 (+) | True | XLOC_033684 |
| TCONS_00065894 | other | upstream | 445543 | 24074861 ~ 24074975 (+) | True | XLOC_033683 |
| TCONS_00065893 | other | upstream | 448034 | 24072381 ~ 24072484 (+) | True | XLOC_033682 |
| TCONS_00065919 | other | downstream | 4671 | 24528414 ~ 24530669 (+) | False | XLOC_033697 |
| TCONS_00065954 | other | downstream | 519267 | 25043010 ~ 25043080 (+) | True | XLOC_033713 |
| TCONS_00065956 | other | downstream | 521439 | 25045182 ~ 25045246 (+) | False | XLOC_033712 |
| TCONS_00065957 | other | downstream | 521667 | 25045410 ~ 25045479 (+) | False | XLOC_033712 |
| TCONS_00065958 | other | downstream | 522105 | 25045848 ~ 25045974 (+) | False | XLOC_033712 |
