RNA id: TCONS_00065924


Basic Information

Item Value
RNA id TCONS_00065924
length 450
RNA type mRNA
GC content 0.40
exon number 19
gene id XLOC_033698
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24573721 ~ 24607165 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGACGTCTGAGAAGAGaattgctttatttacttgCAACAACGAAGTGTATTcaaattatacgtagtttgaacaagcagcaaaagtcatgcttaactaggttaattaggttaactaggcaggttagGAGGGAGTGTGGGAGTTTATCACTATGGTGCCAAATACTACACAACCTCTTAAAAAGTAATGATAAAATAGGGTCTAGCGACACCccttTCATTGaaatgccaactgacccagccagAAGGGTGAAATGTGTCACGTCAGATACAGTAACATGTTTCCAAACAGCCACAATGccgcacaaagtgctttacagagaaGATACAAACAAACAGTACGAtataataaaaaaccaTGCAAtcgaactaaaacaaGATGAGCTGGTCCTGCCGCAGGTCATCCCCATGTTTGAAGgcatacttaaaaaaaaagAGCTCAGccttaaa

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-134 Predicted to enable cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000189871

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068822 lncRNA upstream 110508 24457029 ~ 24464316 (+) False XLOC_033694
TCONS_00068823 lncRNA upstream 110508 24457179 ~ 24464316 (+) True XLOC_033694
TCONS_00065905 lncRNA upstream 359669 24210071 ~ 24215155 (+) False XLOC_033690
TCONS_00068572 lncRNA upstream 362264 24210451 ~ 24212560 (+) True XLOC_033690
TCONS_00065903 lncRNA upstream 374240 24196542 ~ 24200584 (+) True XLOC_033688
TCONS_00068824 lncRNA downstream 66828 24673993 ~ 24678634 (+) False XLOC_033701
TCONS_00068825 lncRNA downstream 69908 24677073 ~ 24678634 (+) True XLOC_033701
TCONS_00068826 lncRNA downstream 74057 24681222 ~ 24694747 (+) False XLOC_033702
TCONS_00068827 lncRNA downstream 83562 24690727 ~ 24694747 (+) True XLOC_033702
TCONS_00068573 lncRNA downstream 108312 24715477 ~ 24715800 (+) True XLOC_033703
TCONS_00065921 mRNA upstream 2790 24528866 ~ 24572034 (+) True XLOC_033697
TCONS_00065920 mRNA upstream 3368 24528430 ~ 24571456 (+) False XLOC_033697
TCONS_00065918 mRNA upstream 47578 24523017 ~ 24527246 (+) True XLOC_033696
TCONS_00065916 mRNA upstream 51081 24520518 ~ 24523743 (+) False XLOC_033696
TCONS_00065925 mRNA downstream 21381 24628546 ~ 24631322 (+) True XLOC_033699
TCONS_00065926 mRNA downstream 38021 24645186 ~ 24673133 (+) False XLOC_033700
TCONS_00065927 mRNA downstream 38026 24645191 ~ 24646830 (+) False XLOC_033700
TCONS_00065928 mRNA downstream 38142 24645307 ~ 24673416 (+) True XLOC_033700
TCONS_00065929 mRNA downstream 122393 24729558 ~ 24813020 (+) False XLOC_033704
TCONS_00065919 other upstream 44155 24528414 ~ 24530669 (+) False XLOC_033697
TCONS_00065907 other upstream 311085 24263623 ~ 24263739 (+) True XLOC_033692
TCONS_00065899 other upstream 457680 24114876 ~ 24117144 (+) False XLOC_033685
TCONS_00065895 other upstream 498003 24076711 ~ 24076821 (+) True XLOC_033684
TCONS_00065894 other upstream 499849 24074861 ~ 24074975 (+) True XLOC_033683
TCONS_00065954 other downstream 435845 25043010 ~ 25043080 (+) True XLOC_033713
TCONS_00065956 other downstream 438017 25045182 ~ 25045246 (+) False XLOC_033712
TCONS_00065957 other downstream 438245 25045410 ~ 25045479 (+) False XLOC_033712
TCONS_00065958 other downstream 438683 25045848 ~ 25045974 (+) False XLOC_033712
TCONS_00065959 other downstream 438974 25046139 ~ 25046208 (+) False XLOC_033712