RNA id: TCONS_00068572


Basic Information

Item Value
RNA id TCONS_00068572
length 573
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id XLOC_033690
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24210071 ~ 24215155 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGGTAGGCAGTGCTGGATACTGAGGCACAGCTCAGGAGCAGCATTACAACAACCAAAGATGCTCAATGCACACCTTTGGTTATTCAGTCAGTCTGTGGTGAATTGGTAACGACAGGCCTCGTCGACGACCACGACAGAGGAACCCAAAAGGCAGTGTTTATTGTCCGATGGAGTAGAAAGCAGCTGCTAAGAAACCAGCGAACAGAGATCGAGGAGCAGCTGGTCTCTGTTCATGACTCTCTCCTGAGCTTCAGCCCCCAGTGCAACCCCCTCTTTATACAAAAGGCAAACTATAGAGGTATGTGAACAATCTGAGTTTGATTTCCAGTGTCTGTTTGAAtatgtgtgaaggagtgtgtctCTTCAGCAGTCGGCTGATTTGGGCGTCTCCTCGCCCTCTGCTGACAGTGGAGCAGTCTGCTCCTTCAGCTCAATCCCCTCTGCAGACTCATCGGTTTTCTTTACTTCCTCCATTGGATACACCACCACACAGAATTTCTGGCCCAGGTATGTCATCTTGTCTGTAAACACAAAGAGAGGAATTTGGTTCACGTGTCATACGTCAATAATA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065903 lncRNA upstream 9867 24196542 ~ 24200584 (+) True XLOC_033688
TCONS_00065897 lncRNA upstream 120214 24087253 ~ 24090237 (+) True XLOC_033681
TCONS_00065888 lncRNA upstream 189333 24018851 ~ 24021118 (+) True XLOC_033678
TCONS_00065885 lncRNA upstream 260694 23946061 ~ 23949757 (+) True XLOC_033675
TCONS_00068821 lncRNA upstream 453261 23752830 ~ 23757190 (+) True XLOC_033672
TCONS_00068822 lncRNA downstream 244469 24457029 ~ 24464316 (+) False XLOC_033694
TCONS_00068823 lncRNA downstream 244619 24457179 ~ 24464316 (+) True XLOC_033694
TCONS_00068824 lncRNA downstream 461433 24673993 ~ 24678634 (+) False XLOC_033701
TCONS_00068825 lncRNA downstream 464513 24677073 ~ 24678634 (+) True XLOC_033701
TCONS_00068826 lncRNA downstream 468662 24681222 ~ 24694747 (+) False XLOC_033702
TCONS_00065904 mRNA upstream 2663 24205034 ~ 24207788 (+) True XLOC_033689
TCONS_00065902 mRNA upstream 37240 24165371 ~ 24173211 (+) True XLOC_033687
TCONS_00065901 mRNA upstream 47583 24153070 ~ 24162868 (+) True XLOC_033686
TCONS_00065900 mRNA upstream 93249 24115082 ~ 24117202 (+) True XLOC_033685
TCONS_00065898 mRNA upstream 93300 24114694 ~ 24117151 (+) False XLOC_033685
TCONS_00065906 mRNA downstream 38807 24251367 ~ 24357169 (+) True XLOC_033691
TCONS_00065908 mRNA downstream 178379 24390939 ~ 24398425 (+) False XLOC_033693
TCONS_00065909 mRNA downstream 178379 24390939 ~ 24398429 (+) False XLOC_033693
TCONS_00065910 mRNA downstream 178569 24391129 ~ 24453754 (+) False XLOC_033693
TCONS_00065911 mRNA downstream 181118 24393678 ~ 24398128 (+) True XLOC_033693
TCONS_00065899 other upstream 93307 24114876 ~ 24117144 (+) False XLOC_033685
TCONS_00065895 other upstream 133630 24076711 ~ 24076821 (+) True XLOC_033684
TCONS_00065894 other upstream 135476 24074861 ~ 24074975 (+) True XLOC_033683
TCONS_00065893 other upstream 137967 24072381 ~ 24072484 (+) True XLOC_033682
TCONS_00065890 other upstream 170395 24033901 ~ 24040056 (+) True XLOC_033679
TCONS_00065907 other downstream 51063 24263623 ~ 24263739 (+) True XLOC_033692
TCONS_00065919 other downstream 315854 24528414 ~ 24530669 (+) False XLOC_033697
TCONS_00065954 other downstream 830450 25043010 ~ 25043080 (+) True XLOC_033713
TCONS_00065956 other downstream 832622 25045182 ~ 25045246 (+) False XLOC_033712
TCONS_00065957 other downstream 832850 25045410 ~ 25045479 (+) False XLOC_033712

Expression Profile

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