RNA id: TCONS_00065902


Basic Information

Item Value
RNA id TCONS_00065902
length 2324
RNA type mRNA
GC content 0.44
exon number 14
gene id XLOC_033687
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24165371 ~ 24173211 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGAGATCCGTCAACGTCgtttccccgcccaccgctcAATACGCCTCTGCTTATCGGTTCAAAACTCAGAGATCTAAAAGACATATTATGCCTATGGATAATttacaaccaatcagaatcaaaatcTGGATCCCTTCAGAAAGTCCCGCCCTCTCTGACTGGGAGAGAGAGAAATTAATGAGCGCAGTTGGTGAGGCTGTCAGCGAGGTTTCCAGTTTACTGTCAGTAAAACGAGTTAAAGACCGTCTGCTGTTGAACAGAGATGTAAACAAGTACTGCAAATTCATCTGGAGAAACAGCAGCACTTTAAACCACATGAAATGTGGAAGAGCCCATGAGAACTACAGATTTGAGAGCTGCCTCGGTGTGATTATTCCAGATGAGCACCTGGATGGCTGTTCTGTTTATCCAAATCCTGAGCATCCAGTCCCAACAGTGCTGAGGCCACGGGGGCCTGGAGTTCCCGATGCTGACTTCCTGCTTTATGTGTTCACTCACAACACAGAAAAATGCAGAGCAGAGTCTAGTGTACTGGCTTATACTGCTCACTGTCAGACGGGTTCAGATGGCCGTCCTCTGGCTGGCACGATGGTCATCTGTAGAGAGACGCTCAAAAAGGAAAGATACACATATCAGCACTTTGTAAAGACAGTGATCCATGAGCTGTTCCATGTGTTGGGCTTCAGCAAAGAGCTCCTCAGCAATTGGAAGGACTGTACAGTTTCCTCTCAGATTGGTGTAGACTGCTGGTCTCATGGTCAGGTGACCAGCACAGACCAGACAGGGCAGGTTAGACTCTACTCTCCTACTGTGATCAGAGCAATGCAGAAACACTTCAACTCTACACACACTGACCTTGGAGCTCCATTAGAGAACAAGGACGCTGCTTTAGATGGTCTCTCTTCACACTGGGAGGCTCGTGTGCTTCAGGGCTCCATTATGGCAGCTTCGCTAGTGGAGGCATCTCTGGTTCGCATTGATGCCATCACACTCGCTGCCCTCCAGGACACAGGCTGGTATTCAGTCAACCACAGCCGGGCTCAGAGCCTGGTGTGGGGAGAGGGTGAAGGCAGTGATTTTGGCTCCGTCTCTGCCTGTCACAATTCTTCAGCTTTCTTTTGCACAGGCAGTGGTCTGGGTTGTCATTTCCTTCATCTCAACAAGGGGGAGTGTGTGACggatcagtacctggatgggtgcCACATATTTAAACCTCTTGCAAATGCTAGTGAGTGCTGGATTGAGGATAATGCAAGGAGTGGAATGAATGAAGGAGGCGGAGAGATATTCGGCTCAGACAGCCGCTGTTTCATATCCAACATCACCAGACTGAATAATGTGACTGCTTACACACCAGTGTCAGGTCATTGTTACAGACACCGATGCACCGGAATAAACAAATATCACATTCAGGTGAAGGACTCTGATTGGATGGATTGTCCAGCAGGAACGAGCATTGAGGTGTCTGGTTATCAAGGATTCATTTTCTGCCCTGAAAACAGATTATGTAAATATTCAGATTTAGCTCCTCCCACATCAACACAAAGAACAGAAAGCCTTTTTAGTGACACCACTGCTCAGAGTGATCTTGGTATGATGGAGAAAGATGCCGCTGTTCAACCCAGCTTCACATCTCTCTTCTTAGTCTCTGAGGCTAAGATCAGCTTGGCAGCGGTATTGAGCTTGATGGCTGTTTTCGCTCTGCTGTCTGCTGCTGTGCTCCTCTACAGGAAGAACTTGTCTGTAAGAGTACATGCTGCTTCATACAGGACACCACTGCCACACATCCTGTACAGAAACTGATCAAAGCATAAAATGATTCAGGAAGGTAATGGAGATGAATTCAAATGGCAGAATCAGGAATTCAGACACAAatgtcacacaaacacacaaagcttGACCGACACATTTATAAATGGTTAATATTTGACAGAGAAGCTGTGACGTGATAAGTGTGCTTTATGATGGTCATAATCTTTCCTAGGGAAAGTTTCTTGATAAGTCTTGTGTGTGAATATGCAAGATGATGTTTGTTTTGACTGAAACTAAGTTGCAGCGATTCACCATTTACTGAAGAACCAACcattatgatttttttctgtaatatatagtttaatagtacaaaataattatacattttcagtcattcatgtagaaatatttctaaaaatgttgtaaaagtCACTGGACAGGAAAACATAATTCTCAGAATGTATTTATAAAACAAGATTACAGtagttttttaatcaaatatttggTTATGATTTAAAGGTATAGAATATCAgggaaataattaattaaagatTTCCAAAGTAGATTATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000173472

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065897 lncRNA upstream 75134 24087253 ~ 24090237 (+) True XLOC_033681
TCONS_00065888 lncRNA upstream 144253 24018851 ~ 24021118 (+) True XLOC_033678
TCONS_00065885 lncRNA upstream 215614 23946061 ~ 23949757 (+) True XLOC_033675
TCONS_00068820 lncRNA upstream 408181 23748479 ~ 23757190 (+) False XLOC_033672
TCONS_00065903 lncRNA downstream 23331 24196542 ~ 24200584 (+) True XLOC_033688
TCONS_00065905 lncRNA downstream 36860 24210071 ~ 24215155 (+) False XLOC_033690
TCONS_00068572 lncRNA downstream 37240 24210451 ~ 24212560 (+) True XLOC_033690
TCONS_00068822 lncRNA downstream 283818 24457029 ~ 24464316 (+) False XLOC_033694
TCONS_00068823 lncRNA downstream 283968 24457179 ~ 24464316 (+) True XLOC_033694
TCONS_00065901 mRNA upstream 2503 24153070 ~ 24162868 (+) True XLOC_033686
TCONS_00065900 mRNA upstream 48169 24115082 ~ 24117202 (+) True XLOC_033685
TCONS_00065898 mRNA upstream 48220 24114694 ~ 24117151 (+) False XLOC_033685
TCONS_00065892 mRNA upstream 68301 24069421 ~ 24097070 (+) False XLOC_033681
TCONS_00065896 mRNA upstream 74259 24081167 ~ 24091112 (+) False XLOC_033681
TCONS_00065904 mRNA downstream 31823 24205034 ~ 24207788 (+) True XLOC_033689
TCONS_00065906 mRNA downstream 78156 24251367 ~ 24357169 (+) True XLOC_033691
TCONS_00065908 mRNA downstream 217728 24390939 ~ 24398425 (+) False XLOC_033693
TCONS_00065909 mRNA downstream 217728 24390939 ~ 24398429 (+) False XLOC_033693
TCONS_00065910 mRNA downstream 217918 24391129 ~ 24453754 (+) False XLOC_033693
TCONS_00065899 other upstream 48227 24114876 ~ 24117144 (+) False XLOC_033685
TCONS_00065895 other upstream 88550 24076711 ~ 24076821 (+) True XLOC_033684
TCONS_00065894 other upstream 90396 24074861 ~ 24074975 (+) True XLOC_033683
TCONS_00065893 other upstream 92887 24072381 ~ 24072484 (+) True XLOC_033682
TCONS_00065890 other upstream 125315 24033901 ~ 24040056 (+) True XLOC_033679
TCONS_00065907 other downstream 90412 24263623 ~ 24263739 (+) True XLOC_033692
TCONS_00065919 other downstream 355203 24528414 ~ 24530669 (+) False XLOC_033697
TCONS_00065954 other downstream 869799 25043010 ~ 25043080 (+) True XLOC_033713
TCONS_00065956 other downstream 871971 25045182 ~ 25045246 (+) False XLOC_033712
TCONS_00065957 other downstream 872199 25045410 ~ 25045479 (+) False XLOC_033712

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU144390 True 354 lncRNA 0.37 1 CI01000026 746944 ~ 747297 (-)
bowfin (Amia calva) TU144390 True 3830 lncRNA 0.37 1 CM030135.1 5750092 ~ 5753921 (-)