RNA id: TCONS_00065912


Basic Information

Item Value
RNA id TCONS_00065912
length 639
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_033695
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24491966 ~ 24508677 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCCTTCCTCGCTTTGAAAGTGCACCTATGTTCTGTTTTTTAATAATGTGATTTAGACAGATTTCACAtcaacatttgttttaataagtttgtttattttgttgaatgAATTAAGGCTACACAGATATTATTGGGGACGTTATGATGGCGTCGATGAGGGAGAGCGACACCGGCCTGTGGCTCCACAACAAACTCGGATCGACGGACGAGCTGTGGACTCCTTCGAGCATCGCTTCCCTTCTCACCGTGTCGGTCATCGATAATATTCGGCTGTGTTTTTCCAGTCTTTCGCCACCGGTGAAGCTGAAACTCTTGCTGGGGATGCTGCACCTCCCGCGCAGGACCGTGGATGAGATGAAGGAGGCTCTGTCAGAGATCATTCAGTTGGCCACAGTGGACTCTGAGCCCTGGGTGTTAATGGTGGCTGACATCCTGAAATCATTCCCAGAGACCGGCTCACTAAACCTGGACCTGGAGGAGCAGAACCCTAATGTACAGGACATCCTTGGAGAACTGCGTGAGAAAGTAAATGAATGTGAAGCGTCAACCATGTTGCCTCTGGAGTGTCAGTATCTGAACAAGAGTGCTTTGACCACGCTGGTGGGGCCGCTCACTCCACCCATCAAACACTTCCAGCT

Function

GO:

id name namespace
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0032021 NELF complex cellular_component

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-6400 Predicted to be involved in negative regulation of transcription elongation from RNA polymerase II promoter. Predicted to be part of NELF complex. Orthologous to human NELFA (negative elongation factor complex member A).

Ensembl:

ensembl_id ENSDART00000149881

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068822 lncRNA upstream 27650 24457029 ~ 24464316 (+) False XLOC_033694
TCONS_00068823 lncRNA upstream 27650 24457179 ~ 24464316 (+) True XLOC_033694
TCONS_00065905 lncRNA upstream 276811 24210071 ~ 24215155 (+) False XLOC_033690
TCONS_00068572 lncRNA upstream 279406 24210451 ~ 24212560 (+) True XLOC_033690
TCONS_00065903 lncRNA upstream 291382 24196542 ~ 24200584 (+) True XLOC_033688
TCONS_00068824 lncRNA downstream 175100 24673993 ~ 24678634 (+) False XLOC_033701
TCONS_00068825 lncRNA downstream 178180 24677073 ~ 24678634 (+) True XLOC_033701
TCONS_00068826 lncRNA downstream 182329 24681222 ~ 24694747 (+) False XLOC_033702
TCONS_00068827 lncRNA downstream 191834 24690727 ~ 24694747 (+) True XLOC_033702
TCONS_00068573 lncRNA downstream 216584 24715477 ~ 24715800 (+) True XLOC_033703
TCONS_00065910 mRNA upstream 38212 24391129 ~ 24453754 (+) False XLOC_033693
TCONS_00065909 mRNA upstream 93537 24390939 ~ 24398429 (+) False XLOC_033693
TCONS_00065908 mRNA upstream 93541 24390939 ~ 24398425 (+) False XLOC_033693
TCONS_00065911 mRNA upstream 93838 24393678 ~ 24398128 (+) True XLOC_033693
TCONS_00065906 mRNA upstream 134797 24251367 ~ 24357169 (+) True XLOC_033691
TCONS_00065916 mRNA downstream 21625 24520518 ~ 24523743 (+) False XLOC_033696
TCONS_00065917 mRNA downstream 23415 24522308 ~ 24523146 (+) False XLOC_033696
TCONS_00065918 mRNA downstream 24124 24523017 ~ 24527246 (+) True XLOC_033696
TCONS_00065920 mRNA downstream 29537 24528430 ~ 24571456 (+) False XLOC_033697
TCONS_00065921 mRNA downstream 29973 24528866 ~ 24572034 (+) True XLOC_033697
TCONS_00065907 other upstream 228227 24263623 ~ 24263739 (+) True XLOC_033692
TCONS_00065899 other upstream 374822 24114876 ~ 24117144 (+) False XLOC_033685
TCONS_00065895 other upstream 415145 24076711 ~ 24076821 (+) True XLOC_033684
TCONS_00065894 other upstream 416991 24074861 ~ 24074975 (+) True XLOC_033683
TCONS_00065893 other upstream 419482 24072381 ~ 24072484 (+) True XLOC_033682
TCONS_00065919 other downstream 29521 24528414 ~ 24530669 (+) False XLOC_033697
TCONS_00065954 other downstream 544117 25043010 ~ 25043080 (+) True XLOC_033713
TCONS_00065956 other downstream 546289 25045182 ~ 25045246 (+) False XLOC_033712
TCONS_00065957 other downstream 546517 25045410 ~ 25045479 (+) False XLOC_033712
TCONS_00065958 other downstream 546955 25045848 ~ 25045974 (+) False XLOC_033712

Expression Profile

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