RNA id: XM_039807839.1


Basic Information

Item Value
RNA id XM_039807839.1
length 2490
RNA type mRNA
GC content 0.53
exon number 19
gene id ndrg4
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40730759 ~ 40802151 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attttgtttagtacacccacagacacacacggcgACGCACACTATTCCAATCCTTAGCAGCCTGAGGGACGCACACACTATCACAGAGAGCAGAAAAGCAGCTAAACCAGACTATACCGACTGGAAAAGATCTGAACTACACCACAGATGGGGCCTGGATTGTTTTGGAACTTCCCTCCCAAGGCTGGCTGCACGGTTCCACAGAGCCTCCTGCAGACCATGTTGCTGTCCAGGATGGCGGGGATGAAGGAGCAGCAGTTCACCGAGGAGAAGCCCCTGCTGCCGGAGCAGCGAGGAATGGACTCAGACATGCAGGATAAAGGAGGGGAGGCATCAGGGGGGTTACCGCGCCCCGCCAGCCCTGCGGCCCTtaacccccctcctccccctagCCGCCCCACTCACCGCTGGCATGTCATGGCACGGCACTGGCTCCGCCAGACCCGCCGTCGGACCAGCGGGGTCCTCCCGGAAAGCTGTGAACAGCTGATGCCAGCGGGGGATTGGAAGGAACATGATATCGAGACCCCTTATGGGATGCTGCACGTGGTGATCCGCGGGGCACCCAAAGGAAACAAGCCCGCAATCCTCACCTACCACGATGTGGGACTGAACCACAAGCTGTGCTTCAACTCTTTCTTCAGTAATGAGGATATGCAGGAGATCACCAAGCACTTTGTGGTGTGCCACGTCGATGCCCCGGGACAGCAGATTGGAGCGTCACAGTTGCCACAGGgGTACCAGTACCCCACCATGGACCAGTTGGCCGCGATGCTGCCCACTGTGGTGCAGCACTTTGGATTTAAGAGCATCGTTGGGATTGGAGTTGGAGCTGGAGCTTACATTCTGGCCAAGTTTGCTCTGATCTTTCCTGACATGGTGGAGGGTTTGGTTCTGCTCAACATCGACCCCAACGGCAAAGGCTGGATTGACTGGGCTGCCACCAAGctgtCAGGTCTGACCAGCGCTCTGCCAGATACTGTGCTGCCACATCTTTTCAGCCAGgAGGAGCTGATGAACAACACAGAGCTGGTGCAGAGCTACCGGCAACAGATTAACAACACCGTCAACCAGTTCAACCTGCAGCTTTTCTGGAACATGTACAACAGCCGGAGGGACCTGGAAATGAATCGCAGTGGGACGGTGCTCAATGCCAAGACTCTGAAGTGTCCTGCGATGCTGGTTGTGGGAGACAACGCCCCGGCTGAGGAGGGAGTGGTGGAGTGCAATTCCAAACTGGACCCAACCAACACCACCTTCCTGAAGATGGCTGACTCTGGTGGACTTCCCCAGCTAACACAGCCCGGGAAGCTGACCGAAGCCTTCAAGTATTTCCTGCAGGGAATGGGCTACATCGCTTATGTGAAGGATCGGAGGTTGAGTGGAGGGCCAGTGCCCTCCGCCAGTATGACCCGCCTGGCTCGTTCCAGGACGGCCTCCCTGACCAGCGCCAGCTCCATCGACGGGTCCCGCTCTCGGGCCTGCACCCATTCCGACAGCACTGAGGGAGTCGGCCCGGTCACCCACACCATGGAGGTGTCCTGCTGAGGAGTCGGCCAGCCCTagaaagagggagggggtggagggatggagagggaaAGAGCAAGACCGAAGGGATGATGGCCAAGAAATGACGGGGGTGGGGTATGAGGAAAAGGTGAAGGATAGAAGGTGTGACTCCTGCTGTGTCTCAAATCGCCCACACCAAGCTACAGGACCACCAACGTTTCTTTCAAACTTCGAGGAAAATGCTGCGGTCATGATTGAAACATGCGAACACTGAACTTTACAAATGTACTTCATACACTTGTTTATTCAGTAAGTACTACTATTCTATATTCAGATAGTGATGAAGCAAGCCGATATATATTTTGGCAGGCGACAATAGGTGGCGGTAATGCTCTGCCCGGCTGCAATTTACCATTAAAATGCAAAGGTAGAGGCATTTTTGATCAGTGCATAACAACcgtgcgcgatttgagacaaCACTACCCTGTTGAAATGTACCCACTACACAATTAAGTACATAGTGTACTCATGGGAGTATCCAATTGAGACACACCTTAACTCTCCGGATCAGACATGGTAGATTGTAGAACGAGACAGCAACAGGAAGGAAAGTTCATGAACAAGGTGGAGACAGCTCTCTCTTTGCTTCATCTATTTCATCCAGATCCCTTTGTCTGCCATCTTTTCCCTACTCCACTGTAAAATAACATATgtgttgcccccccccctctcccctcgcCCAGCAGTTAAACGATTTAAGCAACTGTTTTTGTTCTTGCAGTTTTAttcttgtgtttgctgtctcctctttctttccctgcACCCCCACCACCCACGCCTCCACAGAAAAGGACGTGACGCTGTCTATATGATATGAGCTGCTGTTAATAATGTAATTTGGAAAGGTGAGAAGAGGTGAAAGTGTGGGCAAGGAAAACACAACCTTTAGGTGGTACCTTAATGAAAAAGTGTTATGCATCA

Function

GO:

id name namespace
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0001947 heart looping biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122924 lncRNA upstream 3346 40727146 ~ 40727418 (+) True G91363
TU122919 lncRNA upstream 17810 40712744 ~ 40712954 (+) True G91358
TU122916 lncRNA upstream 26336 40703181 ~ 40704428 (+) False gins3
TU122835 lncRNA upstream 197547 40526743 ~ 40533217 (+) True G91292
TU122830 lncRNA upstream 210977 40518365 ~ 40519787 (+) True G91288
TU122947 lncRNA downstream 40927 40843078 ~ 40860888 (+) True G91383
TU122949 lncRNA downstream 145604 40947755 ~ 40950042 (+) False smpd3
TU123017 lncRNA downstream 259275 41061426 ~ 41064286 (+) False exoc3l1
TU123045 lncRNA downstream 408353 41210504 ~ 41211463 (+) False G91451
TU123046 lncRNA downstream 408466 41210617 ~ 41211799 (+) True G91451
XM_039807837.1 mRNA upstream 20331 40703397 ~ 40710433 (+) True gins3
XM_039807838.1 mRNA upstream 20331 40703400 ~ 40710433 (+) False gins3
XM_039809224.1 mRNA upstream 30482 40636125 ~ 40700282 (+) True znrf1
XM_039808907.1 mRNA upstream 97029 40613516 ~ 40633735 (+) True ldhd
XM_039808954.1 mRNA downstream 17408 40819559 ~ 40829886 (+) True si:ch211-194m7.4
XM_039809354.1 mRNA downstream 65570 40867721 ~ 40950165 (+) True smpd3
XM_039809355.1 mRNA downstream 65570 40867721 ~ 40950165 (+) False smpd3
XM_039807574.1 mRNA downstream 151355 40953506 ~ 40955947 (+) True LOC120563418
XM_039809968.1 mRNA downstream 158702 40960853 ~ 41017023 (+) True LOC120564750
TU122542 other upstream 856587 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 977099 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1850862 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 2050677 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 151457 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 663553 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 667092 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 667092 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 667092 41469243 ~ 41495311 (+) False vps9d1