RNA id: XM_039808515.1


Basic Information

Item Value
RNA id XM_039808515.1
length 2017
RNA type mRNA
GC content 0.57
exon number 6
gene id slc45a3
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 36765837 ~ 36811249 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTATCTCCAGCTCGGAGTGCTTTCCATGCGTATACCTGGATTCTCAACGAATTACACTCGGCTTCTGCATATATGCTTTTTGAAGACAGGTGGTGGATTACGTGATCCAGAATGCTGAGAAGAGGATGAATCCTCCAGTTCATCTGAGACATCCACGTGTCTTTTCTGCTGTCCCTCCCCGACAGCCCTCTTGTCCCATTGGGGCACCATCTGCCTCCCCGCGCTCCCCCCCTTACCCCCGCCCCTGCCCCCAGTAGTGGCCATCCCAGAGCAGAGGAAAGGCGATCCAGCGCCTGTAAATATGCCTGGATGGAGGTCTCAGTGGCGTCTTGTCCTGCTGAACTCCCTGACCTGTGGCCTGGAGATCTGTGTGGCAGCTGGGATCACATACGTGCCCCCACTGCTTCTGGAGGCTGGAGTGGAGGAGCGCTACATGACCATGGTGCTAGGTATTGGTCCAGTGCTCGGCCTGCTCTTCAtccctctgattggctcagcCAGTGACCACTGCAACAGCAGTTACGGCAGACGACGGCCGTTTATCTGGCTGCTGTCTTCAGGAGTCCTTCTGGCACTATTCATCATTCCCAACGCTGACGTTCTGGCCGCGCGCCTTGCCTGGGGTGGGCGCACCTTCCAGGTGGGCTTCCTTATCCTTGGGGTGGGGCTCCTTGACTTTTGTGGGCAGGTGTGCTTCACCCCACTGGAGGCTCTTCTGTCGGACCTGTATCGGGACGAGGAGGACTGCAGCCAAGCCTTCGCCATGTTCTCCTTCATGGTCAGCCTGGGAGGCTGCGTGGGCTATCTGCTCCCAGCGCTGGACTGGAGTCGCGGCCTGCTCTCTGTTTACCTAGGTGGCCAGGCCGAGTGCCTCTTCTCCCTGCTCATCCTCATCTTCATCACCAGTGTGCTCATCACCATGAAGGTGTCCGAGGAGCCCCTGTGTGCCAGCAGCGGCGTGGTGGGCTCTGGATCTTTACTGGAGTCGGGAGCCATGGCGATAGAGGCCGGCCGTTGCGGCGTGCCGCGCTCGTGCTGCTACCTGCTGAAGTGCAAGCTGAGGCTGCTGAAGTCGGGACCCTTGCTGTGCCTGTTGAGGACGTGCTGGTCCATGACCCCGGCCATCTACAGGAGCTACTGCCACGTCCCGCGCGTGATGAGGCAGCTGTGTGTGGCTCAGCTCTGCAGCTGGATGGCTGTCATGTCTTTTATGCTTTTCTACACAGACTTTGTGGGGGAAGGCCTGTACGAGGGCGTGCCCAGCGCATTACCAGGAAGTGTGTCCAAGCAAAGATACGATGAAGgTATCCGTATGGGCAGTCTGGGCCTGTTCCTGCAGTGTGCTACCTCAACCTTCTTCTCCCTGGTCATGAGTCGTTTGGTTCGCCATTTTGGCTCGCGGTGGGTCTACATGAGCAGTATGGTGAGCTTCACGGTCTCTGCTTTGGTCATCTGCCTGTCCAAAAGTGTGGTCTTGGTCACTGTAATGGCGTCCCTCACTGGCTATGCGTACGCCACACTGCAGACTCTGCCCTACACACTCACCTGCCACTACCACAAGGACAAAGAGGTCTATATGCCAAAAAGGAAAACCAAAAGCATGCATAAAAATGGTATTACAACCAAGCGGGACAGTGTGTATTTGACTCCTGTGGAAGAGGAGGGCGGAGTGAACCACAAAACGGGGACTCCCTACGGGCATGCCTTCTTAAGCCAGGACAGTCATGAGTACTATTCGGGTCCACACAGCCAGAACGGCTCATCTCACAGCTCGGGTGGCACCGAACAGGACGAGGCCGATTCGGGGTATGAGAAACGTGGTGTCGGTTTGGACTTTGCCATCTTAGACAGCACCTTCCTACTATCTCAGGTTTTCCCCACCCTCTTCATGGGCATGATCGTTCAGTTCGCGCAGTCCGTCACCGCCTATATCGCCTGCTCGGCCATCTTTGGGGCCGTCGCCATCTACTTAGCCAGTCAAATCATCTTTGACCAAAAGGACCTCAAAAGCTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121568 lncRNA upstream 46848 36721925 ~ 36722827 (+) True G90311
XR_005639939.1 lncRNA upstream 173982 36594156 ~ 36595693 (+) False LOC120563368
XR_005639938.1 lncRNA upstream 173982 36594160 ~ 36595693 (+) False LOC120563368
XR_005639937.1 lncRNA upstream 173982 36594257 ~ 36595693 (+) True LOC120563368
TU121506 lncRNA upstream 237679 36531006 ~ 36531996 (+) False mt2
TU121807 lncRNA downstream 888705 37697764 ~ 37697977 (+) True G90523
TU121864 lncRNA downstream 1187501 37996560 ~ 37996773 (+) True G90575
XR_005640093.1 lncRNA downstream 1243846 38052905 ~ 38054178 (+) True LOC120564394
TU121876 lncRNA downstream 1245450 38054509 ~ 38055005 (+) False G90583
TU121879 lncRNA downstream 1245450 38054509 ~ 38055564 (+) False G90583
XM_039808512.1 mRNA upstream 9851 36728907 ~ 36759824 (+) True c8h12orf4
XM_039808513.1 mRNA upstream 9851 36737703 ~ 36759824 (+) False c8h12orf4
XM_039808365.1 mRNA upstream 86189 36667110 ~ 36683486 (+) True lrrc29
XM_039808366.1 mRNA upstream 86189 36667110 ~ 36683486 (+) False lrrc29
XM_039808965.1 mRNA upstream 106869 36625898 ~ 36662806 (+) True LOC120564181
XM_039808521.1 mRNA downstream 8601 36817660 ~ 36826675 (+) True LOC120563960
XM_039808519.1 mRNA downstream 22569 36831628 ~ 36834314 (+) True LOC120563959
XM_039808520.1 mRNA downstream 22569 36831628 ~ 36834314 (+) False LOC120563959
XM_039809525.1 mRNA downstream 400096 37209155 ~ 37652041 (+) True cdh13
XM_039809523.1 mRNA downstream 499585 37308644 ~ 37669480 (+) False cdh13
unassigned_transcript_383 other upstream 306107 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 984259 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 1558744 35210860 ~ 35210931 (+) True trnaw-cca_9
TU120914 other upstream 2334358 34434089 ~ 34435317 (+) True G89836
TU120882 other upstream 2348494 34381836 ~ 34421181 (+) True G89813
XR_005640145.1 other downstream 1213318 38022377 ~ 38034694 (+) True wfdc1
TU121880 other downstream 1245450 38054509 ~ 38055564 (+) False G90583
TU122023 other downstream 1849307 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 1866516 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 2067991 38877050 ~ 38879902 (+) True G90693

Expression Profile