RNA id: TU124583


Basic Information

Item Value
RNA id TU124583
length 1468
lncRNA type sense_over
GC content 0.49
exon number 4
gene id G92487
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1869462 ~ 2071942 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacagagacacacacaacatactaatcatctgtttgtttttaatacacAAAGACAAACGTTACAAAcatttctgattggctgagaaacATGAGCAGCAGTGACCACTGGGGGGCGCTGTCACTCCTCTCATTGGTCCAACCAGCAGCCTTTCTCTGACAGCTCTGTCACGTTTCTCTGAGAGGACAGTTTGTCTTCAGCTCACACGAAAAACATCCAGAAAACTGTTGAAATCTGAGCCGCCCGACAACCTCTGACATCGTAACGCTGTagataggacacacacacacagacacagacacacacacacacagacacacacagacacacacacacacacacacacacagacacacacagacacacacacacacacagagacacacatacacacacagacacacacacacagacacagacacacacacacacacagacacacacagacacacacacacagacacacacacacacagacacacacagacacacacacacacacagacacacacagacacacacacacacacagacacacacacacagacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacagacacaaacacacacacacacacacacacacacacatacacacacacacagacacacacacacagagacaaacacagagacacacacacacacagagacacacacacacagagacacacacagagacacacacacacacagagacacacacacacagagacacacacacacaaacacaaacacaccgagacacagacagacacacacacacacacacacacacacacacacacacacacacacacacacacaccttgtgtTCGGCTTATACATTTTCTACATTCAGAGATACAGAGCCATGTTGGAGGGGGCGTGTCCCACAGAGGGAGCAGGCAGCTCATTTGCATATCCCGCCCCTCATTAGCATATTAACGACCCCCCAGTGGAGCCTGCTGCCCGCTCCACCGTTAGCATTAATGCTAATGTGTGTGAGTGGACAGCTGGgtgctgctctctgattggctgccgCTGTGACAGCTCAGTTATTGATGACCTCATTAATAACGTCTTTCATCAGCAGATGGGACCCAGTGACAGCTGATCCTAAAAACACCCAAACTCacacctcttcttcttctctacaCACAGTGGTAACGGGACAGGAAACACCCAAACTCacacctcttcttcttctctacaCACAGTGGTAACGGGACAGGAAACACCCAAACTCacacctcttcttcttctctacaCACAGTGGTAACGGGACAGGAAACACTGGGCTCATCTTCAACGACTTCagcactgtgtgtatgtgtgtgtgtgtgtgtgtgtgttcatcttcAATGACttcatcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124651 lncRNA downstream 2945 2054559 ~ 2056284 (-) True G92518
TU124578 lncRNA downstream 7799 1953340 ~ 2051430 (-) False G92487
TU124584 lncRNA downstream 10652 2027533 ~ 2048577 (-) True G92488
TU124585 lncRNA downstream 10652 2045762 ~ 2048577 (-) False G92488
TU124586 lncRNA downstream 17053 2005648 ~ 2042176 (-) True G92489
TU124660 lncRNA upstream 6504 2078446 ~ 2093734 (-) True G92523
TU124661 lncRNA upstream 19704 2091646 ~ 2092146 (-) True G92524
TU124670 lncRNA upstream 29590 2101532 ~ 2101922 (-) True G92531
TU124673 lncRNA upstream 38136 2110078 ~ 2110857 (-) True G92534
TU124686 lncRNA upstream 83643 2155585 ~ 2156317 (-) True G92544
XM_039811237.1 mRNA downstream 30950 2026387 ~ 2028279 (-) True s1pr1
XM_039811231.1 mRNA downstream 39275 1916283 ~ 2019954 (-) False zbtb37
XM_039811229.1 mRNA downstream 39276 1916283 ~ 2019953 (-) True zbtb37
XM_039811458.1 mRNA downstream 86616 1968185 ~ 1972613 (-) True LOC120565573
XM_039811219.1 mRNA downstream 201238 1837537 ~ 1857991 (-) True LOC120565418
XM_039811468.1 mRNA upstream 62619 2134561 ~ 2163094 (-) True LOC120565577
XM_039811226.1 mRNA upstream 381377 2453319 ~ 2456640 (-) True LOC120565424
XM_039811227.1 mRNA upstream 381377 2453319 ~ 2456299 (-) False LOC120565424
XM_039811228.1 mRNA upstream 381709 2453651 ~ 2456299 (-) False LOC120565424
XM_039811481.1 mRNA upstream 420870 2492812 ~ 2526088 (-) True LOC120565579
TU124644 other downstream 28172 2027131 ~ 2031057 (-) False s1pr1
TU124527 other downstream 39317 1921982 ~ 2019912 (-) False zbtb37
TU124522 other downstream 146192 1893688 ~ 1913037 (-) False G92445
TU124604 other downstream 168524 1888362 ~ 1890705 (-) True G92495
TU124656 other upstream 4900 2076842 ~ 2087097 (-) False slc30a7
TU124674 other upstream 216333 2288275 ~ 2307309 (-) True G92535
TU124728 other upstream 289049 2360991 ~ 2361662 (-) True G92564
TU124734 other upstream 294210 2366152 ~ 2368010 (-) False G92565
TU124730 other upstream 294663 2366605 ~ 2368847 (-) True G92565

Expression Profile