RNA id: TU132271


Basic Information

Item Value
RNA id TU132271
length 2061
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G98019
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24833437 ~ 24835517 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATATTTTTATTGAGAACACAGCATGCCAGTGAAAATATgctccacacagagctttaTGTGTTAGACCCCATAAGAGTCCATAATTGCACCCAAATTACTGTATCTCATTTGATGCCATTACATAATGATGGGGGGGAAAACAAACAAGTCCTTTTATGATTCAtaacgggagagagagggcTTAAATGTAGCAAGCGGTTGGATAATGTGCGTGTATTCGCTCTGAGCAAATCTCTGACAATTCCTTCCAGCCTATGAAGGACCTTTGTTGCTATAGGGATGGGGTGTCCATGGCAACAGTGTGAAATCAGGGGATGTGTCATTAAGCGGGAAACACATGAAGTTAATAGGGTTAGGGGAAAACAGAGGTGACAGACTGCCATCGGTGACCCCATTCACACATTGACGGGGTCCataatgagagaaaaaaaaaaaaaaagaggtctcttttaaaaaaaaaaaaaaaaaaaaaaatcaaaaaaatgaaGTTGATGGACTTAAGAAGTCTTAGCATGGTTAGTCCATTATTCTTTCCCTTGGCGCATGCAGAGCCAGTCACAGAACCAAAACTATAAAACTAAATATACAAATActtgtataaaaataaatcccTTTCAACCCGTTTGGAATCCTCTATCTTACTACAAAGTGTAACATTACTATACATACAACCTCTTTAGGTCTTACTAGCGACAtaacaaccaaaacaaattctgcAAAATCCAAGTCATTCACACTAAAAACACTCTGACATATCAAATCAATAAGACAATTAGGAACTAAGACTAAGTCTTTTTGGGATGGGGTTACATTGGTACAGTAACAAATGTGCAAAGACatggtgcaaaaaaaaatagctaATGTCAGATTCTAATGAGGATAAAAAGTTGTTAAAACCACCTTAAAAAATAATTACTGCAGGTGTGGATTTCACATTGTTAGACCAAACTGATTATTTACGATATAATATTCTCCCTTTCAGAAAAACTAAATAAGTGACTTACTTTAAAGTACATCAGTGCTACAGGTAACTTGTGTTGAGGTGAAAGCTAGAATTGGAAGGAAATACAAAACTATTTGATCAAAGGGGCTCCTCTAACTTCAACGTCCATTCACATTCTTGCACTTTCTGGAAGTTTTACGTAGCATCGACAAGaaagacttaaaaaaacaactaaaaaaaacaagtaagtACACCCACACACTTCAAATCACATACACTGACAtgcttgaaaaataaaaaagcaaacatAAAAGATAACTCATCCCTTTCCTCCAGTGACTGagaaacatttacataaaatattaatatcaaaattaGATAATATTGCATTAGCACAGCAACAGCTGCAAACCTGTGCTGAGCCAACGTAATGCTGTGTTGCTCATGATATGTACGGTTTAGATATCGAATAGATCAATAGAATAGAAACTGCTGGCATTAAGAGCGGTATTGGGGTCATTGTAAATCTTAAAATCATtggacagaaaataaacaactcTGTTAAGACTAAGCGTAAAAGAAAACCCAAAGCTACTCTCAAATAAAACTGTTGTTGTTTAAAACTCAGGCAGcttaaaaaaaacgtttcctGGACAAATCTCAGGAGTTTCAACTATGTTTTCAATTAGGAGGTGGTAGCCGACGATTAACTGTCCCCTTGGTGCTTAAACTCTCTCTTGGTGATAAGATTACTGGCCATGGGAAAGAGCGTTTACACCAATAACAGTTAGTCTCTTCTGAGGCTacaaggccacacacacactctttaggCTGTGAGGTCGTCCGAAGCGGGTGCGAAGTCCGTGGTGCGCAGGGCGTTGGACTGCGCCCGTCTGCGGGCCAGTCTGGAGTTGGAAGGAGGAGAAAGCCTCATGGAGCAGACGATGGCTCCGACATCCTCCTGCTGCTCGTCGTGATGGGAGAGCTGCCGGTTAAAGGCGATGGCTTCTGCTGCAAACTGGGTCAGGTCCTTAGTGCTGCTGTTCCTGGAACAAGAGAGAGACCATTTTTACCTTTGTACCATCTACACATTCCCCATGGCACATTGTGGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132260 lncRNA upstream 45897 24787331 ~ 24787540 (+) True G98015
TU132259 lncRNA upstream 48095 24784796 ~ 24785342 (+) True G98014
TU132243 lncRNA upstream 68212 24749028 ~ 24765225 (+) True LOC120565649
TU132146 lncRNA upstream 191352 24638466 ~ 24642085 (+) True G97938
TU132089 lncRNA upstream 320404 24511971 ~ 24513033 (+) True G97896
TU132274 lncRNA downstream 2096 24837613 ~ 24875666 (+) True G98021
TU132293 lncRNA downstream 49903 24885420 ~ 24890376 (+) True G98033
TU132407 lncRNA downstream 355547 25191064 ~ 25191838 (+) True G98128
TU132401 lncRNA downstream 393865 25229382 ~ 25232400 (+) True G98123
TU132450 lncRNA downstream 417956 25253473 ~ 25258486 (+) True G98163
XM_039810187.1 mRNA upstream 57777 24765447 ~ 24775660 (+) True LOC120564918
XM_039811563.1 mRNA upstream 79568 24749017 ~ 24753869 (+) False LOC120565649
XM_039812166.1 mRNA upstream 100278 24728796 ~ 24733159 (+) False LOC120565988
XM_039812165.1 mRNA upstream 100278 24728801 ~ 24733159 (+) True LOC120565988
XM_039812163.1 mRNA upstream 111340 24711667 ~ 24722097 (+) True si:ch211-221n20.8
XM_039810188.1 mRNA downstream 16770 24852287 ~ 24873916 (+) True elovl1b
XM_039810869.1 mRNA downstream 112083 24947600 ~ 24988333 (+) False slc44a5b
XM_039810871.1 mRNA downstream 112083 24947600 ~ 24988333 (+) False slc44a5b
XM_039810873.1 mRNA downstream 112084 24947601 ~ 24988333 (+) False slc44a5b
XM_039810868.1 mRNA downstream 112085 24947602 ~ 24988068 (+) True slc44a5b
TU132257 other upstream 49556 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 1355619 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1511528 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 2257235 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 2258289 22575067 ~ 22575148 (+) True LOC120566220
TU132285 other downstream 16784 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 32500 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 697308 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 894741 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 1155989 25991506 ~ 26019371 (+) False dot1l

Expression Profile