RNA id: TU133170


Basic Information

Item Value
RNA id TU133170
length 1475
lncRNA type sense_over
GC content 0.39
exon number 1
gene id gatad2ab
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27456747 ~ 27491957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCAAATGGTATCCCTTCTGCTAGAAGGTGTCTAGTTTATTTGAACCCTCTCTGGATATAAACATGAATTCATGCTAGACTGAGGGGGTGTAAGAAATGTCATATTTTTGACATTGTTTTGCTTTTAGTCATAGGTTGTGGTGCATTATTTTTCTTCTGTAGACAAACTGTCTCTGGGTTTATTTATAGGGTTATGTTAGTAAAGATATATGCTTATGCCCTAAGTTTGAATGGAACTCCacttaaaatgattttttttttttttctctcgcgTCCAGTGGCTCCCACTCATCTTACGATTGGTCTTAGAGAAGCTGGACAGCTTTCAGAATGTAGTTATGCAAAAACCCCTATAGCAACAAATGACATGAACTTCTTAGTCTTTAACATTTAAGGTGTGTATGATTTATGTGGGGTCCTTGAATTGAGCTAACTATGCCTTTTCACATGAGCTATAGTGCATTTTTTATCAGGTTGCAGCAGCACAGGATAAGCTagtaaagtacagtatgtcCTACATTAAACAAGGAGATTCCCATATTGCTCATGGAGTTGAGTTATTTTATTAACAATGTGCTGTCTTTTAATTTCAGTCACTGGGATGGTCCAGTTTCTTTAACTCAGCAATGGCTTTACGCAGACATTTCTGTGTCACTAAATTTGAAGATTAAAATATCGATGTGTTGAATTTAAGCAGCAACGTCAGGGTAAAATGTTTGCATATTTCAAAATCTGGACGTTTCACAAGCaatatgtaaaaacaaaaacccaactGACAAAAGAGGCTGACCATCCCACCGGTTGTTTTCTCAATATCCTGTTTCTGTCCatttttaaaaaagagaaaaaaaatgttcacaTTAAAACAACAGTGACAATGATGTTATCACTATGTAATTACAAACCTGGAGTCTTGCTGCCCTGTTGCCTCACTCCGCGTATCATAATTCATCCATGATGTGTTAAATAATGCAACCTTGTAAGGATTTGATGTCCTGTATCCGGAGTGCACTCTCGAGCTCGTTGATTATCAGGATCCGTACTGAAAAGATGGTGCACTGCATTAGGTAACTGGGCATCAGTTGACCTTTATCCCTCTGTACTGGGGTATCATAACTGTACGTTCGGGTTTCATTTAGGACGGTGCAACAATACACTATGTACATTGCTGATAGAAATACAAGCGTACaaagttttatttaaagtgctcaagATTTTGTATTTCTGTCTCAAAGTAGCATCGAAAATCTTCCAGGTTGTCTGTACATTCCCGACAGGCAGAAGGTAGCAGCCCGCGTCTCGTGGATGCAAAATAAGCAATCTGGAATGAGCCCCATCATTTTGTGCCCTGCTAAGTGTAACCCTGTGCTGTCCTGACTACTGCCTGCTGCTGTGTGACAACAATATCACCATTCCGTTTTGTTTGGGGTCAAAGCTGCTGCGGAATGCAGCGCGGCCCAAATGGAAAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133164 lncRNA downstream 56064 27399659 ~ 27400774 (-) True G98678
TU133163 lncRNA downstream 57493 27398664 ~ 27399345 (-) True G98677
TU133148 lncRNA downstream 59885 27396691 ~ 27396953 (-) True G98662
TU133147 lncRNA downstream 60961 27395564 ~ 27395877 (-) True G98661
TU133145 lncRNA downstream 62505 27394044 ~ 27394333 (-) True G98659
TU133190 lncRNA upstream 57810 27516122 ~ 27520338 (-) True G98699
TU133226 lncRNA upstream 69841 27528153 ~ 27567744 (-) True G98732
TU133245 lncRNA upstream 128128 27586440 ~ 27587033 (-) False mef2b
TU133246 lncRNA upstream 139046 27597358 ~ 27607306 (-) False mef2b
TU133247 lncRNA upstream 139046 27597358 ~ 27601575 (-) False mef2b
XM_039811803.1 mRNA downstream 3440 27401601 ~ 27453398 (-) True yjefn3
XM_039811439.1 mRNA downstream 60452 27376711 ~ 27396386 (-) True cilp2
XM_039811712.1 mRNA downstream 106466 27345522 ~ 27350372 (-) True si:ch211-212d10.1
XM_039812420.1 mRNA downstream 117989 27336259 ~ 27338849 (-) True LOC120566144
XM_039812423.1 mRNA downstream 129625 27325403 ~ 27327213 (-) False LOC120566145
XM_039810193.1 mRNA upstream 36995 27495307 ~ 27512380 (-) True mau2
XM_039810837.1 mRNA upstream 128192 27586504 ~ 27597413 (-) True mef2b
XM_039810836.1 mRNA upstream 149323 27607635 ~ 27613325 (-) False borcs8
XM_039810835.1 mRNA upstream 149323 27607635 ~ 27613325 (-) True borcs8
XM_039810833.1 mRNA upstream 157130 27615442 ~ 27618819 (-) False LOC120565230
TU133085 other downstream 365240 27090234 ~ 27091598 (-) True G98612
XR_005640358.1 other downstream 1012614 26444156 ~ 26444224 (-) True LOC120566224
TU132808 other downstream 1158343 26295947 ~ 26298495 (-) True G98429
TU132703 other downstream 1423447 26030593 ~ 26033391 (-) True LOC120565253
XR_005640267.1 other downstream 2571597 24877651 ~ 24885241 (-) False zfyve9b
TU133187 other upstream 53157 27511469 ~ 27512361 (-) False mau2
TU133255 other upstream 157164 27615476 ~ 27618771 (-) True LOC120565230
TU133284 other upstream 271369 27729681 ~ 27730557 (-) True G98777
TU133288 other upstream 366753 27825065 ~ 27828307 (-) True G98781
TU133486 other upstream 805213 28263525 ~ 28269725 (-) True G98938

Expression Profile