RNA id: TU133284


Basic Information

Item Value
RNA id TU133284
length 877
RNA type TUCP
GC content 0.55
exon number 1
gene id G98777
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27729681 ~ 27730557 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACCGTTACCGTTGGATGGAGGCTCGTCAGAAGATGCGCTGGAGGCTCGTTCTCCTGGCTGGGTGGCGGTGTCATTTTGCCCCGTGCTTTGGACTGCAGGCACTAATTGAATCAGTGGCATCACCTCTTTCTCCTGCTCGGACAGTCCTTCCTCTGGATTCTGTGGTCCACTGGTAGGAGTCCTGAAGGAAAAACTACCACTCCTTTGCTCCGTAATGGCATTGTCCATGCTGCCCTTGTTTCCACTTGGTTTTGGTATACTCAGGTTTCTGCTGGATGCCACTCCCTGCGTCTGGTTCTCTCCTGCTTTTTCCTCAAGCACAGAAGGTCCCTTTTCcgtctcctccacctcctcaccTCCTCTCCAGTACCTAAATGGCTTCATCAGAGTGTTCACAAACTCGGCCAACACACTGTTACCGGTCTGAAGCTGGGGAGTGGAAGAAGCTATGGAGGATAATGTTGGGGTGTCAGATGATCCGAAATAGCCACCATCATCTTCTTCATGAGCAGAACCTCCATGGCTCTCCAGGCTCTCGAGGTCAGAAAGGCCCATGGTGCTGCTACTCTTTGGGCCGTCAGACTCCTCCTGGCTGAGCTGGCTGCTTCTGGGTCCAACCTGGTTTTCATCCCAGCCCTCCTCTGGCCTTAGGTGGATGACTACATGCTCTTCAGAAATCTCAGAGGAGTTGTTGATTCCAGCAATGGAGTGGACTCCTGTGTTGTCCAAGTCAACCAATCCGGTCCAGGTGGAAGTCTTGGCAAAAGGGCCACTATGCTGGGCTTCAGTGACTGAGGAGATGTCCTCTGCTGCTGGGTTGGGGGCCTTGTACAGAGCCTGTGCCTCTGCAGCCTGGACCCCCGCTGGCTGGCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133283 lncRNA downstream 1016 27728434 ~ 27728665 (-) True G98776
TU133282 lncRNA downstream 3851 27725604 ~ 27725830 (-) True G98775
TU133280 lncRNA downstream 16323 27713133 ~ 27713358 (-) True G98773
XR_005640281.1 lncRNA downstream 41871 27685907 ~ 27687810 (-) True LOC120565760
TU133258 lncRNA downstream 110795 27615476 ~ 27618886 (-) False LOC120565230
TU133287 lncRNA upstream 85199 27815756 ~ 27816586 (-) True G98780
TU133336 lncRNA upstream 251030 27981587 ~ 27982524 (-) True G98819
TU133372 lncRNA upstream 295146 28025703 ~ 28027240 (-) True G98852
TU133446 lncRNA upstream 357892 28088449 ~ 28090583 (-) True G98903
TU133447 lncRNA upstream 357892 28088449 ~ 28090583 (-) False G98903
XM_039810833.1 mRNA downstream 110862 27615442 ~ 27618819 (-) False LOC120565230
XM_039810836.1 mRNA downstream 116356 27607635 ~ 27613325 (-) False borcs8
XM_039810835.1 mRNA downstream 116356 27607635 ~ 27613325 (-) True borcs8
XM_039810837.1 mRNA downstream 132268 27586504 ~ 27597413 (-) True mef2b
XM_039810193.1 mRNA downstream 217301 27495307 ~ 27512380 (-) True mau2
XM_039812485.1 mRNA upstream 125110 27855667 ~ 27864994 (-) True hapln4
XM_039812527.1 mRNA upstream 148758 27879315 ~ 27891985 (-) True tm6sf2
XM_039810564.1 mRNA upstream 287579 28018136 ~ 28021719 (-) True polr2eb
XM_039810113.1 mRNA upstream 371929 28102486 ~ 28112239 (-) True LOC120564867
XM_039810101.1 mRNA upstream 396724 28127281 ~ 28137246 (-) True fsd1
TU133255 other downstream 110910 27615476 ~ 27618771 (-) True LOC120565230
TU133187 other downstream 217320 27511469 ~ 27512361 (-) False mau2
TU133085 other downstream 638083 27090234 ~ 27091598 (-) True G98612
XR_005640358.1 other downstream 1285457 26444156 ~ 26444224 (-) True LOC120566224
TU132808 other downstream 1431186 26295947 ~ 26298495 (-) True G98429
TU133288 other upstream 94508 27825065 ~ 27828307 (-) True G98781
TU133486 other upstream 532968 28263525 ~ 28269725 (-) True G98938
TU133487 other upstream 532968 28263525 ~ 28269725 (-) False G98938
XR_005640190.1 other upstream 873812 28604369 ~ 28637021 (-) False LOC120565123
XR_005640256.1 other upstream 1236478 28967035 ~ 28978444 (-) False atg4b

Expression Profile