RNA id: XM_039810836.1


Basic Information

Item Value
RNA id XM_039810836.1
length 1794
RNA type mRNA
GC content 0.44
exon number 5
gene id borcs8
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27607635 ~ 27613325 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCGGAATATTGTCGTGTGacacatgaaaacaaaaatacGGAAGAAGCAAGAATCAGCTGACACATTTCGCGTACAACTGCATTGTGTTGTTATCGGTTTCTGGCATAAAGCAGCCCTGCATTATGGAGGACCAGGAGATGCAACTAAAAGTTAGACGagTGACGGACAAATTCACGGAGAGCATGTACGTGCTAGCTAACGAGCCGTCAGTGGCTCTCTACCGACTGCAGGAACACGTCAGAAGGTCCCTGCCTGAACTGGTGCAACACAAGacagacatgcagagcTGGGAGGAGCAGAGTCAAGGAGCCATCTACAGTGTAGAGTATGCATGCAGTGCCGTGAAGAGCATGACGAACAGCAGCTTGTATTTCAAAAACATTGACGGCCTCCTCCGTCAAGCCATCAGCATGAAGGAACAGATTAGCAACTCTCAAGGACGCAGGAAAAGGACCATGGACTCTGGCATGCTAAAGGAAGGGGGAGAAAAGCACGGCTCCGGGATGTGACGTGACTTCCTGAGTTGTTGGTGTTGCTCCTACAGTCCCTTGCTCTATTACCTCTTGATTGAGGCTGAAGTGGGGTCATAAGGGCGACACCTCATCACAATAGAGGGACTGCCTCCAGTAACCCCCCCCAGTACAAGCCGCTCAGTGGAACAGAGCACCACAGCACTGCCAGGTTCAGCATTAAAAACACTTAAGTCATGGACGCTGCTCAAAGAATGCATTGTTCTCATGGACTCGCTGGACGGGCCAGAGAGAAAGCAGCCGTGCTGCTTTTGCCTCTGCTGTTGAAAATCCACTGCGCCGCCAATGTTTTGGACACTCTTTGTGAATTTGTTGTTGAAGGCTAAAGACTAAAAGAGTACCCTGCATGCAAATTATGAAAGCTCAACACACTTACACAAGGAAAACCTACAAAAATGTGCTAGAAGGCAGTAACCGATGCCCAGTTCTACTTTATTTCAGGATTTAAATATATGACAAATGCCAGATTGGGCAACATGTTCTTACAGAGAAAATCCAGAATcttaaccaaaaaaaaatgaaaatctagTTTTTCATTCTTACCTGCCAAGTAGACAGAAACCCCCAGGCAAAACAGTCCGATAGCCACATGTCGTACAGCTCTGCTATCCAAAAGGAACCAGTCTGCTCTATTGAAACAGATGTCATATGGTTTTCAGACATGTTTACACTTTTAACAttgctattttgtttttattttctcatcAGTGCATAAATGAAGATGATTTTATGCAACAATTTCTGTGTTgacaattttctttttgtctcaggTGCACCTTCTTTGCTATGCAATCCAacttttcttcatctttttttatttctccccTGATAAGTTCGTATACCAGAACTGTTAAGTCCTAAAGCATTTGATTATTAATTAGCTGGGTATGTTTAAATGCTCTATATTTTGTGAAGCTCATTATTATTCACATTTTCTTGGAATGTCCCCTCTGTCAGTAGGGAGGTCCTGGGGTATGCTGTTGGATTTGAAAACCGACATGGGAAAGGGCCAGCTAGAGGCTGTGTGCTGGGTGCATAATGAGAGGAAGGCCATTGTTTAGATGGGATTCATAGGCTTTGAGAGGTGGGGGTCGGCCAACAACATTGCAGTACGGGCCTCTGAACTGACACATACGGAAGACACTTTCATACTTataaaactgttgtttttttttattaatgaaacTTAATGCAGTCAACCAGGGTCCGCTGTGGTTTACAGAGAACAATTAAAGAAGATTGTGTGGGCACAAGAACACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133246 lncRNA downstream 329 27597358 ~ 27607306 (-) False mef2b
TU133247 lncRNA downstream 6060 27597358 ~ 27601575 (-) False mef2b
TU133245 lncRNA downstream 20602 27586440 ~ 27587033 (-) False mef2b
TU133226 lncRNA downstream 39891 27528153 ~ 27567744 (-) True G98732
TU133190 lncRNA downstream 87297 27516122 ~ 27520338 (-) True G98699
TU133256 lncRNA upstream 2151 27615476 ~ 27618771 (-) False LOC120565230
TU133258 lncRNA upstream 2151 27615476 ~ 27618886 (-) False LOC120565230
XR_005640281.1 lncRNA upstream 72582 27685907 ~ 27687810 (-) True LOC120565760
TU133280 lncRNA upstream 99808 27713133 ~ 27713358 (-) True G98773
TU133282 lncRNA upstream 112279 27725604 ~ 27725830 (-) True G98775
XM_039810837.1 mRNA downstream 10222 27586504 ~ 27597413 (-) True mef2b
XM_039810193.1 mRNA downstream 95255 27495307 ~ 27512380 (-) True mau2
XM_039811446.1 mRNA downstream 115678 27457769 ~ 27491957 (-) False gatad2ab
XM_039811444.1 mRNA downstream 115678 27457769 ~ 27491957 (-) False gatad2ab
XM_039811445.1 mRNA downstream 115683 27457769 ~ 27491952 (-) True gatad2ab
XM_039810833.1 mRNA upstream 2117 27615442 ~ 27618819 (-) False LOC120565230
XM_039812485.1 mRNA upstream 242342 27855667 ~ 27864994 (-) True hapln4
XM_039812527.1 mRNA upstream 265990 27879315 ~ 27891985 (-) True tm6sf2
XM_039810564.1 mRNA upstream 404811 28018136 ~ 28021719 (-) True polr2eb
XM_039810113.1 mRNA upstream 489161 28102486 ~ 28112239 (-) True LOC120564867
TU133187 other downstream 95274 27511469 ~ 27512361 (-) False mau2
TU133085 other downstream 516037 27090234 ~ 27091598 (-) True G98612
XR_005640358.1 other downstream 1163411 26444156 ~ 26444224 (-) True LOC120566224
TU132808 other downstream 1309140 26295947 ~ 26298495 (-) True G98429
TU132703 other downstream 1574244 26030593 ~ 26033391 (-) True LOC120565253
TU133255 other upstream 2151 27615476 ~ 27618771 (-) True LOC120565230
TU133284 other upstream 116356 27729681 ~ 27730557 (-) True G98777
TU133288 other upstream 211740 27825065 ~ 27828307 (-) True G98781
TU133486 other upstream 650200 28263525 ~ 28269725 (-) True G98938
TU133487 other upstream 650200 28263525 ~ 28269725 (-) False G98938

Expression Profile