RNA id: TU133447


Basic Information

Item Value
RNA id TU133447
length 2045
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G98903
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28088449 ~ 28090583 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATTTCtttccacattttattttacattcctGGAAATAGCAGGTTTTACAACTGCATAGTGAATATTATTTCTTAATTATGGAGAGCTACTTAATTAACCCTTTTCAGACATGCCAACCACGTTGGATTGAACAAgcaatttagaattttttttttttttttaaacattttacataTTTCTTTTATGTAGTGCTAAAATGCATTCACATTGACAATATTTGTTTGAATAAGGATGAAGAATTCTAAAACCAAATATGCAATATTTTAGGGAGCCTGCCGATTAGATGCTGTAAAACTACTACTAAAACTTTGAGCACCTAGCCCTCATATGTGTAGATTTTCAAAGGTAGGTGATGCCTAAGTTGCTAAACAATAGTGGTGAACACAGCATAAAGTTATGGGTACACTGAGTGAGTAATGtatccaaaaagaagtctgtctCCTATATGTTCATGTGGATTCGGTTTATTTAAGCTTCAGTATTTTCTGTGTAATGCGAACAGTAGCAAAACAAGTTAACATTTGCCACCttgacatttttgaaaaaatgttaaatatcacGCACCAATGTATCGAAACAATCACACCTGAAAGCATTTCTCGCAGATGAGTGAAAAGAGAGGCATTTCAGCCAACCATATTAACAATTTGCATTTCTGATTTTCAGTTCCATTTTCTTAACTAGCTGGAGTGTAAGTGTTACATTTTTAGTTCATTTTccatgtaaatgttttcagattacatCTTTATCCATTTCCCTTTAACAGATAACATTAATATGACAGCAAAGGGTGAGTGCATGAGGGGAAAATGctgtacacaaaaaaaaaaaaaaaaaaacaccacatgtagtgcatttttctttttctttacaaCCAACAGGAAAATGTTACCCGATAAAGATGTTGAgtgtattttaaaaatatatggtGATTTGTTCCACTGAAATGATTGGCAATAAGTgcaaaagacattttcattttgagatAGCCTGTTTAAAAGTGAGGAACACAAGGCTTGATCCAGGCTGATACTATTacacaatatcaataataataaatcatacACCACAATTTATAACATTACTTTTTGCTATTTAGCATTAGACATTGTTTTGAAAATAGCCTGGATTGGTTCACCAAATACAGCAATGAAATGCAACCTCAGCAGCTTTGAACACACTTAAATGAGAAAACCCAAAACAGATAACGATTGCATCCATCTCCTTTGGTAtctttgagacacacacacacacacacacacacacacacacacacacacacacttgtTTCACACTTGCCCACATTAAGTCAGACAGTCACAGCCAGTCTGTTCCCTGTGCTCATGCTAATATAATGCCACGGTGGGCACATGGCTCAAAGAGGAAAACTAAAAGAGGCAAATAGAAACTCCAGACAGAGTACACATCAATACTCCAGTGGTACCGCCTTAGCGTCTCCTCTTCTACACCCGTATTGCATGATAGGCAGAATCAGGTCAACCAGACATCAAATTGGGATTCCACTGTAGCAGATCGTGGCAAAAGTCTGTATCACTGAAAGCCGAGAACAGGAAGGAAGCAGTGATACACAGGTCTACTGATCCCTCACCACTCCTTCTACAGGAGCAGGTCAATAGGACCATAAAGGCTAGTTAATTAAAAAGAAGTTAGCTTCAAGATCAACATCATAAGAGCTTTAcactctctccttctccagGTTATTATGAGGCTGTAAATGATTGCAGACAGGATCTTCTGAATCCAAACAAACAAGAAGAAACCAGCAAAAAAGGAATGTCAAATACCCGTGAGGGTATTCTGATGACAGCAGTATGACATCTGAAGTAAACCAGAGATGAAGAGAGGAAAGACCGACAGAGAGTCGGACAGGAAAAGAAGATAAGAGCGTCACAGGCTTTGGCAGCAAGGGAGTTTGTTGCCCCTCTGCCCGTCTGTGGTTGGGGGGAGGCTTATGTCCACTACATTGTTGCCTGGAGACTCATCATTTCCAGATCTGTCCGATATTTGCTTCTGAGATACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133372 lncRNA downstream 61209 28025703 ~ 28027240 (-) True G98852
TU133336 lncRNA downstream 105925 27981587 ~ 27982524 (-) True G98819
TU133287 lncRNA downstream 271863 27815756 ~ 27816586 (-) True G98780
TU133283 lncRNA downstream 359784 27728434 ~ 27728665 (-) True G98776
TU133282 lncRNA downstream 362619 27725604 ~ 27725830 (-) True G98775
TU133452 lncRNA upstream 6708 28097291 ~ 28101329 (-) True G98908
XR_005640168.1 lncRNA upstream 23981 28114564 ~ 28119361 (-) True LOC120564868
TU133488 lncRNA upstream 108779 28199362 ~ 28269725 (-) False G98938
TU133489 lncRNA upstream 108779 28199362 ~ 28269725 (-) False G98938
TU133492 lncRNA upstream 108779 28199362 ~ 28269725 (-) False G98938
XM_039810564.1 mRNA downstream 66730 28018136 ~ 28021719 (-) True polr2eb
XM_039812527.1 mRNA downstream 196464 27879315 ~ 27891985 (-) True tm6sf2
XM_039812485.1 mRNA downstream 223455 27855667 ~ 27864994 (-) True hapln4
XM_039810833.1 mRNA downstream 469630 27615442 ~ 27618819 (-) False LOC120565230
XM_039810835.1 mRNA downstream 475124 27607635 ~ 27613325 (-) True borcs8
XM_039810113.1 mRNA upstream 11903 28102486 ~ 28112239 (-) True LOC120564867
XM_039810101.1 mRNA upstream 36698 28127281 ~ 28137246 (-) True fsd1
XM_039810102.1 mRNA upstream 36698 28127281 ~ 28137068 (-) False fsd1
XM_039812122.1 mRNA upstream 81203 28171786 ~ 28177428 (-) False scamp4
XM_039812121.1 mRNA upstream 81203 28171786 ~ 28177427 (-) True scamp4
TU133288 other downstream 260142 27825065 ~ 27828307 (-) True G98781
TU133284 other downstream 357892 27729681 ~ 27730557 (-) True G98777
TU133255 other downstream 469678 27615476 ~ 27618771 (-) True LOC120565230
TU133187 other downstream 576088 27511469 ~ 27512361 (-) False mau2
TU133085 other downstream 996851 27090234 ~ 27091598 (-) True G98612
TU133486 other upstream 172942 28263525 ~ 28269725 (-) True G98938
TU133487 other upstream 172942 28263525 ~ 28269725 (-) False G98938
XR_005640190.1 other upstream 513786 28604369 ~ 28637021 (-) False LOC120565123
XR_005640256.1 other upstream 876452 28967035 ~ 28978444 (-) False atg4b
XR_005640255.1 other upstream 876468 28967051 ~ 28978444 (-) False atg4b

Expression Profile