RNA id: XM_039812532.1


Basic Information

Item Value
RNA id XM_039812532.1
length 1974
RNA type mRNA
GC content 0.57
exon number 2
gene id LOC120566211
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28687446 ~ 28705450 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATACAGAGCGGTGTGAGCGCAGTGGAAGGACGCGCTTTCCATCGCGCTCCTGAGAAAAACCCCGACTTGTCTGCTGGACAGCGGCGTACGacagacagacccacacacactcagaccaACAACAGTCAAGGACATATGTGAGCGCGGCGCGTTTCCGCGGGGAGTCTACATCCAGGATTCAGGAATTGTGCGCAGGTCACGGCATATTTGTTtagaaactaaataaacaatGCACTCTGCTGGCGACAACTAATTCACAAAGATGAGTCACCGAGGGGGTGATCGACAACATCCAGTGGTTCTGGGGTCTTCTCATGCGGGACAAAGTCCGGTAAGCTGGGCCATTCTCACCCACAGAGCGATAAGCGTTTCTCGGTCACCTTCTGAAATGATGTCTTGTGGCGACGTTCGTTGCGCGCCAGAGTGCGTGTGAGTGACTGACCGATAGTCTttctgaaagagaaagagaggctgGATATAAACAGCAGCCAGGCTTGTAGGCAGCGACAGCCATACACTCAGAGCAGCCATCTCGCCTCTGTCACAGCTCCTCAGACCCATGCAGGATGCCCGGAAAGCGCCGGGGAGTCCTGGTCCAGCTCAGCCCGAGTTCATGACGCTCTGGGCGGCCTCGTCATGCGTCTCTTGCCCGAGCCCAGCGCCCAGTCCCTCcggctcctcttcctctttatcTTCGTGATGGGGGTGACCCCTTCCCCGGCTCTCACAGCCGGCTGCCCCGACAGATGCGTGTGCGACGACCAGCTGGTGGTCCAGTGCGCCGGGCAGGAGCTCACCATGTTCCCCAATGACCTGCCCCTGGCAACACGGCAGCTCATCATCTCCAACAACCGCATCGGGGAACTCCCGGCGCTTCAGCTCAACTACCTGTCCGATCTGGTCTATCTGGACTGCAGCAACAACTCTCTGACCGAGATCTCCGAGTCCACCTTCGGGAATTTGCGGAAACTCGCCTACCTGGACCTGTCGTTCAACACCCTGCTGCAGATCGAGGACCGTACTTTCGGGCCCCTGGCGTCTCTGGTGATGCTTCGGCTGACGGATAACCCGAGTCTGGGGGAGATCCACCCGGATGCCTTCTCGGAGAACATGGCTCTGCAGGTGTTGGATGTGAGCCGGAACAACCTGACGGCCCTCAACATCAGCAGCCTGATCGCCCTGCCTTCTCTGCGCTCGCTGGGGCTCAGCGGCAACCCCTGGAGCTGCGACTGTGACACGGAGGACCTCTGCCTCTGGGTGCAGATCGAGGGCTTCAAGTTCCAAGACGAGGGCCAGACAGTTTGCCACAGTCCCCCAGAGCTGGCGGGCCAGCGGATGGCGGAGGTCGGCATGCAGCTGCGGGCGGACTGCCACCAAGGCCTGGGCTACTGGGACTACCTGTTCTTCATCGCCATCGGCTTCGTCATCTTCTCGGCCGGCACGGTGTCGGCCTGGGTGATGGGCGTGCTCATGGTGCTGTACGAGCGCTACAGCAAAAGGAAGAGTGAGGACATGGACAGcgatgatgaggaggagagaaatgGGATGGGCGGAGGAggatgtggaggaggagggggaaacCAGGGGAACGGGGATGTGAGCAAGTCTGGCATGCAGGTGTGACAGACAGGTGTAAAACAACATGAGGAGGGATGACATGAGACCAGCAGAggagaaaagacagagagggaagaaCCAGAGGTGATGAGACCACTCTGAGACCAAATGCTCTGCAATGAACCAAGACCTGACTGTCTCTCTTTGTTACAGATTTAGATATCGCAATATGCTCTTCACCATATTGgacagaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagaaagagagacagacagagacagcaaTAAGGATGACTATGCCTTTACTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133519 lncRNA downstream 412016 28274080 ~ 28275430 (-) True G98962
TU133488 lncRNA downstream 417721 28199362 ~ 28269725 (-) False G98938
TU133729 lncRNA upstream 39318 28744768 ~ 28745193 (-) True G99130
TU133733 lncRNA upstream 43652 28749102 ~ 28751800 (-) True G99134
TU133763 lncRNA upstream 150819 28856269 ~ 28857558 (-) True G99161
TU133768 lncRNA upstream 161143 28866593 ~ 28866798 (-) True G99165
TU133814 lncRNA upstream 247852 28953302 ~ 28955846 (-) True G99204
XM_039810756.1 mRNA downstream 27317 28651766 ~ 28660129 (-) False LOC120565212
XM_039810757.1 mRNA downstream 27388 28651766 ~ 28660058 (-) False LOC120565212
XM_039810754.1 mRNA downstream 27653 28649875 ~ 28659793 (-) False LOC120565212
XM_039810755.1 mRNA downstream 27653 28651766 ~ 28659793 (-) False LOC120565212
XM_039810758.1 mRNA downstream 27653 28651766 ~ 28659793 (-) True LOC120565212
XM_039810197.1 mRNA upstream 19803 28725253 ~ 28732165 (-) True LOC120564929
XM_039811385.1 mRNA upstream 49601 28755051 ~ 28772333 (-) True zyg11
XM_039811393.1 mRNA upstream 131132 28836582 ~ 28853587 (-) True angptl1a
XM_039811266.1 mRNA upstream 260956 28966406 ~ 28978444 (-) False atg4b
XM_039811265.1 mRNA upstream 260956 28966406 ~ 28978444 (-) True atg4b
XR_005640190.1 other downstream 50425 28604369 ~ 28637021 (-) False LOC120565123
TU133486 other downstream 417721 28263525 ~ 28269725 (-) True G98938
TU133487 other downstream 417721 28263525 ~ 28269725 (-) False G98938
TU133288 other downstream 859139 27825065 ~ 27828307 (-) True G98781
TU133284 other downstream 956889 27729681 ~ 27730557 (-) True G98777
XR_005640256.1 other upstream 261585 28967035 ~ 28978444 (-) False atg4b
XR_005640255.1 other upstream 261601 28967051 ~ 28978444 (-) False atg4b
TU133963 other upstream 1047775 29753225 ~ 29758214 (-) True G99324
TU134289 other upstream 2178825 30884275 ~ 30885171 (-) True G99587
TU134567 other upstream 2896413 31601863 ~ 31608734 (-) True G99811

Expression Profile