Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00067547 |
| length | 3509 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 10 |
| gene id | XLOC_034709 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 24124289 ~ 24149670 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0003407 | neural retina development | biological_process |
| GO:0001501 | skeletal system development | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0030198 | extracellular matrix organization | biological_process |
| GO:0009948 | anterior/posterior axis specification | biological_process |
| GO:0031638 | zymogen activation | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0030574 | collagen catabolic process | biological_process |
| GO:0030010 | establishment of cell polarity | biological_process |
| GO:0060026 | convergent extension | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0001666 | response to hypoxia | biological_process |
| GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
| GO:0010842 | retina layer formation | biological_process |
| GO:0031012 | extracellular matrix | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004222 | metalloendopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030901-1 | Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Acts upstream of or within several processes, including gastrulation; retinal ganglion cell axon guidance; and skeletal system development. Predicted to be located in extracellular matrix and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; head; head mesenchyme; mesoderm; and musculature system. Human ortholog(s) of this gene implicated in Winchester syndrome; esophagus adenocarcinoma; and myocardial infarction. Orthologous to human MMP14 (matrix metallopeptidase 14). |
| ensembl_id | ENSDART00000005884 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00067545 | lncRNA | downstream | 54393 | 24058768 ~ 24069896 (-) | True | XLOC_034707 |
| TCONS_00069204 | lncRNA | downstream | 174604 | 23946001 ~ 23949685 (-) | True | XLOC_034702 |
| TCONS_00069203 | lncRNA | downstream | 217800 | 23903295 ~ 23906489 (-) | False | XLOC_034701 |
| TCONS_00067536 | lncRNA | downstream | 217863 | 23903527 ~ 23906426 (-) | True | XLOC_034701 |
| TCONS_00067535 | lncRNA | downstream | 220136 | 23902916 ~ 23904153 (-) | False | XLOC_034701 |
| TCONS_00067559 | lncRNA | upstream | 210477 | 24360147 ~ 24364826 (-) | False | XLOC_034714 |
| TCONS_00067560 | lncRNA | upstream | 212636 | 24362306 ~ 24364715 (-) | True | XLOC_034714 |
| TCONS_00067563 | lncRNA | upstream | 228551 | 24378221 ~ 24390807 (-) | False | XLOC_034716 |
| TCONS_00067564 | lncRNA | upstream | 230514 | 24380184 ~ 24390822 (-) | False | XLOC_034716 |
| TCONS_00067565 | lncRNA | upstream | 230627 | 24380297 ~ 24390815 (-) | True | XLOC_034716 |
| TCONS_00067546 | mRNA | downstream | 11805 | 24100155 ~ 24112484 (-) | True | XLOC_034708 |
| TCONS_00067544 | mRNA | downstream | 76973 | 24041635 ~ 24047316 (-) | True | XLOC_034706 |
| TCONS_00067543 | mRNA | downstream | 77259 | 24041501 ~ 24047030 (-) | False | XLOC_034706 |
| TCONS_00067542 | mRNA | downstream | 77268 | 24041175 ~ 24047021 (-) | False | XLOC_034706 |
| TCONS_00067541 | mRNA | downstream | 77290 | 24039464 ~ 24046999 (-) | False | XLOC_034706 |
| TCONS_00067548 | mRNA | upstream | 23317 | 24172987 ~ 24181777 (-) | False | XLOC_034710 |
| TCONS_00067549 | mRNA | upstream | 26932 | 24176602 ~ 24181746 (-) | False | XLOC_034710 |
| TCONS_00067550 | mRNA | upstream | 26935 | 24176605 ~ 24181159 (-) | False | XLOC_034710 |
| TCONS_00067551 | mRNA | upstream | 30614 | 24180284 ~ 24181732 (-) | True | XLOC_034710 |
| TCONS_00067553 | mRNA | upstream | 37911 | 24187581 ~ 24193080 (-) | False | XLOC_034711 |
| TCONS_00067518 | other | downstream | 1187041 | 22937129 ~ 22937248 (-) | True | XLOC_034690 |
| TCONS_00067494 | other | downstream | 2287423 | 21836676 ~ 21836866 (-) | True | XLOC_034675 |
| TCONS_00067493 | other | downstream | 2293439 | 21830686 ~ 21830850 (-) | True | XLOC_034674 |
| TCONS_00067492 | other | downstream | 2300762 | 21823363 ~ 21823527 (-) | True | XLOC_034673 |
| TCONS_00067455 | other | downstream | 4168097 | 19956078 ~ 19956192 (-) | True | XLOC_034652 |
| TCONS_00067552 | other | upstream | 37911 | 24187581 ~ 24193080 (-) | False | XLOC_034711 |
| TCONS_00067584 | other | upstream | 691031 | 24840701 ~ 24853898 (-) | True | XLOC_034727 |
| TCONS_00067600 | other | upstream | 1141363 | 25291033 ~ 25291152 (-) | True | XLOC_034734 |
| TCONS_00067607 | other | upstream | 1613514 | 25763184 ~ 25763298 (-) | True | XLOC_034737 |
| TCONS_00067608 | other | upstream | 1641559 | 25791229 ~ 25791355 (-) | True | XLOC_034738 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000026_00720139_00726461.mRNA | True | 2642 | mRNA | 0.46 | 9 | CI01000026 | 719120 ~ 726461 (-) |
