RNA id: TCONS_00067564


Basic Information

Item Value
RNA id TCONS_00067564
length 841
lncRNA type retained_intron
GC content 0.42
exon number 5
gene id XLOC_034716
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24375070 ~ 24390879 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgcgcaaccCAAGAAGAACAGAACTGAAGTGGTCGTGTGCGCAGCATTAAACGGtttctGCAAAAAAAGAGTCATGGCTCAAGCCAAAATCTGGGTCCTGAAGCAGCATTTTGATGGCTTTCCCAAAGACTCCGACTTTGAGCTGAAAGTTGAGCAGCTGTCTGAGCCAGCAAATGGAGAGGTTCTTCTGGAGGCCCTTTTTCTTAGTGTGGATCCTTACATGAGGCCATTCAGCAGTTTTCGTATGAAAGCAGAAGACGTGATGATTGGAACTCAGGTTGCCAAGGTGATTAAAAGTAATAATCCCTCATTCCCTGTGGGCTGCCATGTGGTTGGTCGATCTGGTTGGCGAACACATACCTTGTCAGATGGGAGTGATCTCACTAAAATCTTGGATGACTGGCCTCATGATGTCTCCCTCTCACATGCTCTCGGAGCCATCGGCATGCCCGGGTAAAGTTCACGCGCTGCTTCTTTCAAAGCCACTCTTTCTTTTACAAATAGTTCTGGAAAGGTTAAACACATGTAAATCACTATGGAGCATGCAAATGGAGCATGTTATTTCTTACAAAAAAATTGCATAAGTTATTGGGatacacataaaaaaatcacTTACCCTCAAGTTATTCCAAACCAGCATGAATATCATTCAGTTGTTGAACATTGATTgtatccaaacattttttttccttacTACGGGAGTAAACAAAAAAGCAGATGTTTGTTTGCCAACGTTTAATAAGCAGAATATTAAGTTTTTGCACAGGGTGCGAAGGAATACAGATTTAGAAAGTCTGCAAAAGACAATGAGATACCAAAGAAAACAGACACCAGGtaacaa

Function

GO:

id name namespace
GO:0006693 prostaglandin metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0032440 2-alkenal reductase [NAD(P)+] activity molecular_function
GO:0047522 15-oxoprostaglandin 13-oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-80 Predicted to enable 15-oxoprostaglandin 13-oxidase activity. Predicted to be involved in prostaglandin metabolic process. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in cytoplasm. Is expressed in digestive system; nervous system; and pectoral fin. Orthologous to human PTGR1 (prostaglandin reductase 1).

Ensembl:

ensembl_id ENSDART00000137661

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067559 lncRNA downstream 15358 24360147 ~ 24364826 (-) False XLOC_034714
TCONS_00067560 lncRNA downstream 15469 24362306 ~ 24364715 (-) True XLOC_034714
TCONS_00067545 lncRNA downstream 310288 24058768 ~ 24069896 (-) True XLOC_034707
TCONS_00069204 lncRNA downstream 430499 23946001 ~ 23949685 (-) True XLOC_034702
TCONS_00069203 lncRNA downstream 473695 23903295 ~ 23906489 (-) False XLOC_034701
TCONS_00069205 lncRNA upstream 190145 24580967 ~ 24586171 (-) False XLOC_034720
TCONS_00069206 lncRNA upstream 190145 24580967 ~ 24589865 (-) True XLOC_034720
TCONS_00067571 lncRNA upstream 202440 24593262 ~ 24621696 (-) True XLOC_034721
TCONS_00067587 lncRNA upstream 593540 24984362 ~ 24985394 (-) False XLOC_034729
TCONS_00069207 lncRNA upstream 599137 24989959 ~ 24994722 (-) True XLOC_034729
TCONS_00067561 mRNA downstream 6522 24366962 ~ 24373662 (-) True XLOC_034715
TCONS_00067558 mRNA downstream 15648 24357231 ~ 24364536 (-) False XLOC_034714
TCONS_00067557 mRNA downstream 143820 24208611 ~ 24236364 (-) True XLOC_034713
TCONS_00067556 mRNA downstream 175519 24197457 ~ 24204665 (-) True XLOC_034712
TCONS_00067555 mRNA downstream 175984 24196575 ~ 24204200 (-) False XLOC_034712
TCONS_00067566 mRNA upstream 66369 24457191 ~ 24472991 (-) True XLOC_034717
TCONS_00067567 mRNA upstream 94226 24485048 ~ 24491897 (-) False XLOC_034718
TCONS_00067568 mRNA upstream 95588 24486410 ~ 24491614 (-) True XLOC_034718
TCONS_00067569 mRNA upstream 117301 24508123 ~ 24520866 (-) True XLOC_034719
TCONS_00067570 mRNA upstream 202387 24593209 ~ 24621689 (-) False XLOC_034721
TCONS_00067552 other downstream 187104 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067518 other downstream 1442936 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 2543318 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 2549334 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 2556657 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067584 other upstream 449879 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 900211 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 1372362 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 1400407 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067631 other upstream 1909973 26300795 ~ 26304876 (-) False XLOC_034753

Expression Profile

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