RNA id: TCONS_00067571


Basic Information

Item Value
RNA id TCONS_00067571
length 2898
lncRNA type read_through
GC content 0.48
exon number 23
gene id XLOC_034721
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24593209 ~ 24621696 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTACAATGTTTTCGTTTCCAAAAACGGACGCGATGATGCGCTGTCAGATGTACATTACAACTTTATTATTGTCTTAAATTAAgacagcaagttttttttttgtacggcCATATTGGTTATTAGTAATCAATTGAAGTTGCTTCAGATTATAAGCTGTTGCGAAAAGCAAAAGCTCCAGTAGATCCAGTGCAGGGTCTTTGCTATAGGCCCTGCAATTCATCTCCCACCGCCGGACAAATTtgcaattttctttttatatgcCTTTCTGCCTATTCACTACGGTTTCATAACACTTCGTCGATCATTGAAGATGGACACTGACAAGTTTAACTATGTGTACAGTTGCGATTTGGACATAAACGTTCAACTGAAAATAGGCAGTCTGGAGGGAAAGCGAGAGCAGAAGAGCTACAAAGCTCTGCTTGAAGACCCCATGCTGCGATTCTCAGGACTCTATCAGGAGAGCTGCTCTGATCTGTACGTCACCTGTCAGGTGTTTGCTGAGGGAAAACCACTTGCCCTGCCTGTACGAACCTCTTATAAGGCCTTCAGCACTCGCTGGAACTGGAATGAATGGCTCCGGCTGCCCGTGAAGTATCCTGACCTGCCTCAGAGTGCCCAGGTGACTCTGACCGTGTGGGACGTGTATGGACCTGGCCGCGCCACACCTGTTGGGGGCACTACAGTCACCTTGTTTGGAAAATATGGAATGTTCCGGCAGGGCATGCATGATCTGAAGGTGTGGCCGGGTGTGGAGGGAGATGGAACTGAGCCCACCAGTACACCAGGACGGACCAGCAGCTCTCTGGCAGAAGACCAGATGGGCCGCCTGGCCAAGCTAACAAAAGCTCACCGTCAGGGACACATGGTTAAAGTGGACTGGCTGGATCGCTTGACCTTCCGAGAGATTGAGATGATCAATGAGAGTGAGAAGCGTAGCTCTAATTTTATGTACCTTATGGTTGAATTCCCTCGTGTCAAAAGTGGTGAACGTGAATACAGCATTGTCTATTACGAAAAGGATGCAGATGAATCCTCTCCTTTGCCGACCAGTTCAGATATTGTGAAAGTGCCTGACCCCCAGATGTGCATGGAAAATCTAGTGGAGAGTAAGCATCATAAACTGGCCCGTAGTTTGCGCAGTGGACCTTCTGACCACGATCTCAAACCTAACGCAGCCACACGCGATCAACTTAATATCATAGTGAGCTACCCACCTACAAAACAGCTGAGCTCTGAGGAACAGGACCTTGTGTGGAAGTTTAGATACTACCTCACCACACAGGAGAAGGCTCTCACTAAGTTCCTGAAGTGTGTGAACTGGGATCTGCCTCAGGAGGCCAAACAGGCGCTGGAGCTACTGGGAAAGTGGCGTCCGATGGATGTGGAGGATTCACTGGAGCTGCTGTCGTCGCAGTTCACCAACCCCACCGTCAGACGCTATGCCGTCGCCAGGCTACAGCAGGCCGATGATgagGATCTGCTGATGTACTTGCTCCAGTTGGTGCAGGCATTGAAATATGAGAATTTCAACGATATCCAGGGTGGTTTGGAGCCTGCCAATAAAAGAGACAATCAGGGGGGTTTGACCGAGAGCTCGACAACAGGAGATCTGGACAGTTCTCAGTTGGCATCAGCTATTGCAGTGATGCCCAGCTCACAAAAAGGCAAAGAGGGAACAGATGGTGAAAATCTAGAGCAAGATCTGTGCACCTTCCTTATATCACGTGCCTGCAAAAACTCTACACTGGCAAACTATTTATACTGGTATGTGATAGTGGAGTGTGAGGATCAGGACACGCAGCAGAGAGACCCAAAAACCCATGACATGTACCTCAATGTGATGAGGCGCTTCAGTCAGGCTCTTCTTAAGGGTGATAAGAGTGTGCGAGTGATGCGTTCACTTCTGGCCTCCCAGCAGACGTTTGTAGATAGACTGGTGCAGCTCATGAAAGCTGTTCAAAGAGAGAGCGGAAACCGCAAGAAAAAGACGGAGCGCTTACAGAGCCTGTTGGCTGATAATGAGAAGGTGAATCTGTCAGAGATTGAGCCCATTCCTCTCCCTCTGGAGCCACAGATCCGCATCAAAGGCATCATTCCTGAGACCGCAACGCTCTTCAAGAGTGCTCTGATGCCAGCAAAGCTCATCTTTAAGACTGAAGATGGAGAGCAATATCCTGTCATCTTCAAACATGGGGATGACCTGCGGCAGGACCAGCTCATCCTGCAGATTATCTCACTCATGGACAAGTTGCTGAGGAAAGAGAATTTGGACCTGAAGTTGACCCCATACAAAGTTTTGGCGACCAGCACCAAACACGGTTTTATGCAGTTTGTGCAGTCAGTGCCTGTGGCTGAGGTTTTAGCGACTGAAGGAAACATTCAGAGTTTCTTCAGAAAGTACGCACCCAATGATAAAGGACCGTATGGCATCAGCTCTGAGGTCATGGACACGTATGTTAAAAGCTGTGATACTCCAATCTCATTTTGAATCTGTTCTCTCTGATGGTGGATGCTAATATTCCAGACATTGCGCTGGAGCCTGACAAAACCGTAAAAAAGGTTCAGGACAAGTTTCGATTGGACCTCTCGGATGAGGAGGCGGTGCATTACATGCAGAGTCTGATTGATGAGAGCGTTGGAGCATTGTTTGCTGCTGTGGTTGAACAGATACACAAGTttgcacagTATTGGCGCAGATGAGCAGATGTCATGAAGACTAATTGACATCATCGGTGAGCACCAGATGGATGAACTGCACCTCAGAGACGGGCAGGAGACAAGGATGTGCCAAGGCCACACTAGTGATATCATCACTCATTCATGCACTCGGTCTTCACTCCACTGAATATCtttgtaaatatattataaaaatgtaataaaatgatctgtataa

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0000045 autophagosome assembly biological_process
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0030242 autophagy of peroxisome biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0005768 endosome cellular_component
GO:0005777 peroxisome cellular_component
GO:0000407 phagophore assembly site cellular_component
GO:0034271 phosphatidylinositol 3-kinase complex, class III, type I cellular_component
GO:0034272 phosphatidylinositol 3-kinase complex, class III, type II cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0052742 phosphatidylinositol kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko04371 Apelin signaling pathway
ko04070 Phosphatidylinositol signaling system
ko04145 Phagosome
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05132 Salmonella infection
ko05131 Shigellosis
ko05152 Tuberculosis
ko05010 Alzheimer disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko04131 Membrane trafficking

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069206 lncRNA downstream 3397 24580967 ~ 24589865 (-) True XLOC_034720
TCONS_00069205 lncRNA downstream 7091 24580967 ~ 24586171 (-) False XLOC_034720
TCONS_00067564 lncRNA downstream 202440 24380184 ~ 24390822 (-) False XLOC_034716
TCONS_00067565 lncRNA downstream 202447 24380297 ~ 24390815 (-) True XLOC_034716
TCONS_00067563 lncRNA downstream 202455 24378221 ~ 24390807 (-) False XLOC_034716
TCONS_00067587 lncRNA upstream 362666 24984362 ~ 24985394 (-) False XLOC_034729
TCONS_00069207 lncRNA upstream 368263 24989959 ~ 24994722 (-) True XLOC_034729
TCONS_00067592 lncRNA upstream 425921 25047617 ~ 25049370 (-) False XLOC_034730
TCONS_00067593 lncRNA upstream 425921 25047617 ~ 25049374 (-) True XLOC_034730
TCONS_00067601 lncRNA upstream 718060 25339756 ~ 25523412 (-) False XLOC_034735
TCONS_00067569 mRNA downstream 72396 24508123 ~ 24520866 (-) True XLOC_034719
TCONS_00067567 mRNA downstream 101365 24485048 ~ 24491897 (-) False XLOC_034718
TCONS_00067568 mRNA downstream 101648 24486410 ~ 24491614 (-) True XLOC_034718
TCONS_00067566 mRNA downstream 120271 24457191 ~ 24472991 (-) True XLOC_034717
TCONS_00067562 mRNA downstream 202383 24375070 ~ 24390879 (-) False XLOC_034716
TCONS_00067572 mRNA upstream 5380 24627076 ~ 24644004 (-) False XLOC_034722
TCONS_00067573 mRNA upstream 9834 24631530 ~ 24644893 (-) False XLOC_034722
TCONS_00067574 mRNA upstream 22193 24643889 ~ 24645540 (-) True XLOC_034722
TCONS_00067575 mRNA upstream 59582 24681278 ~ 24699985 (-) True XLOC_034723
TCONS_00067576 mRNA upstream 93144 24714840 ~ 24719655 (-) True XLOC_034724
TCONS_00067552 other downstream 400182 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067518 other downstream 1656014 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 2756396 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 2762412 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 2769735 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067584 other upstream 219005 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 669337 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 1141488 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 1169533 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067631 other upstream 1679099 26300795 ~ 26304876 (-) False XLOC_034753

Expression Profile

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