RNA id: TCONS_00067573


Basic Information

Item Value
RNA id TCONS_00067573
length 1984
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_034722
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24627076 ~ 24645540 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAATGACAAGTCGTCTGGACTCGTTTTAGCAAATCGGTTCTTTTGAACAGCTCATTTCCAGGAACCTGATCAAACCTTACCCAGCTTATTACCAGAGGAGTCCAAAACATTCTACGATTCGTAGAAATGAATCGACTCGTGTAATTTGATTCATCGTATGAACATCGCTATACCGGAGTTTATTTTAAATGACGACTTCTTATATTTTCATTAAGTTATTTTGCACTTACTAAAACAAAACGACATGCATAACAATGATTTTATAAGGCAACTGTCATGTTGAAGTAACGTTTGATTATCCGTTCAAGAATGTAGCAACAACGCTTGAGAAAAAACTCAGGGAAACCGCATAATGACCCAGAGAAATCCGTCTCCGGTTGTTTTGTTTTCAAGTTGATGGATTGTCGCCGGtttcttttaatttctttaatcaGGAACACGACATATAAAACCGAAGACTTTGTTGGTCCTTCGCCGCAAACACTTTCGAGATGATTGAGGTGGTGGCATCTATGGCACGGGGGCCTGTGTTTTTGGCCGGAGAGGTTTTAGAATGTCTTGTTACCTTCACAAACCCAATGTCACACCTCTCTACATCTGCCAGCAGTGAGATGTTGGCATGGTCCAGTGCTCAGATCCACTGCCAGTTTCATGCCAGCGAGAGCCGCGTGGCTCTACCCACTCAGGGCACCAAGCAGGACGTGCAAGCTGAGAGTGACACCGTGCTGATACCAAGCAGAGGTGAACGAGGGCAGTGTGTCCTGGACACACCACCAAAGATTTTATTCTGTGATCTTCGCTTGGACCCTGGAGAGAGCAAGACATATTCCTACAGCGAGGTCGTGCCCACTGACGGTCCGCCTAGTTTTCGGGGTCAGGCAGTGAAATACGTGTACAAACTCACGATTGGGTGTCAGCGAGTCAACTCGCCTATCAAATTACTGCGAGTCCCTTTCAGAGTCCTAGTGCTTCATGGCATGCCAGAGCCTCCGTTCCATCAGGATGAAGAAGTAGCTCCTTCAAACCCTTTCCTTGAGGAGGAGGAAGGAAGCAGGAGAGATACAAGACCACTAGAAAGAGCACTGGACATGCTAATGATCACTACCTCACGCCGGTGCCCATATATGTTCAACATCACAAACGTGCGGGGGAAGGTGGCTAAGTTCTGCATCTTTAAGACCGTGTACAGGCTTGGAGAAGATGTTATCGGCACTTTCACATTCTCAGAAGGAGATATTCCATGTATACAGTATTCAGTAAGTCTGCAAAGTGAAGAGGAGGTGCAGGAGCAGTATCAGAGACGACCCGGCCAGGCAGTCAGTGTCACTGGTCATGGCCGACATCTAGAGTCCTGCTTGCACACAGCATCCAGCCATTTCTCTCTTCCTGTGCCTCTTAACGTCACACCAGGGTTCACCACAGATATAGTGACGTTAAGATGGCGTCTGCATTTTGAGTTTGTCACGGCGAGGGAGCCTGTGGAGGCACCAGTGGTCCTGCAGAATCAGTCAGAGGTCACAGTGTGGACCGGGGCCGAGCACGTGGATGTGGACACCTTCAGCTGGGACCTGCCAATCAAAGTGCTTCCCACCAATCCCACGCTCGCTTCATATGTTTCACAGTTCACAGGGACAAACAGCATCAATATTTGAGTTGTGCTAGGGTTTGAGGCGGGAGATCCTAAAACTAACAAGCGTTGTGGTGTCATTCGAGCAGTCCATTCCAATTTCAGTGTCGTTTGACTGGTTTTACCTTGTGCCGTGCAGTGAAATCATTCTTTATTTAAGCTACTTTAACATTTCAGACTTGACCAAGAGTCTGCTTTACCTCTTGTAATGTTAACAAATGTTCTGTATTTATTGTCAATATTGCAATGTATGCTCCAAAAGACGGTTTCTATTATATTTCAGTTCCTCTATTGCAAGCTATTTTGTACATTTCTCTACATGCAAAAGAAAACTGAATAAAGTCTGTAAAGAGTTA

Function

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0000139 Golgi membrane cellular_component
GO:0034066 RIC1-RGP1 guanyl-nucleotide exchange factor complex cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040718-352 Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be part of Ric1-Rgp1 guanyl-nucleotide exchange factor complex. Predicted to be active in Golgi membrane. Orthologous to human RGP1 (RGP1 homolog, RAB6A GEF complex partner 1).

Ensembl:

ensembl_id ENSDART00000048921

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067571 lncRNA downstream 9834 24593262 ~ 24621696 (-) True XLOC_034721
TCONS_00069206 lncRNA downstream 41665 24580967 ~ 24589865 (-) True XLOC_034720
TCONS_00069205 lncRNA downstream 45359 24580967 ~ 24586171 (-) False XLOC_034720
TCONS_00067564 lncRNA downstream 240708 24380184 ~ 24390822 (-) False XLOC_034716
TCONS_00067587 lncRNA upstream 339469 24984362 ~ 24985394 (-) False XLOC_034729
TCONS_00069207 lncRNA upstream 345066 24989959 ~ 24994722 (-) True XLOC_034729
TCONS_00067592 lncRNA upstream 402724 25047617 ~ 25049370 (-) False XLOC_034730
TCONS_00067593 lncRNA upstream 402724 25047617 ~ 25049374 (-) True XLOC_034730
TCONS_00067601 lncRNA upstream 694863 25339756 ~ 25523412 (-) False XLOC_034735
TCONS_00067570 mRNA downstream 9841 24593209 ~ 24621689 (-) False XLOC_034721
TCONS_00067569 mRNA downstream 110664 24508123 ~ 24520866 (-) True XLOC_034719
TCONS_00067567 mRNA downstream 139633 24485048 ~ 24491897 (-) False XLOC_034718
TCONS_00067568 mRNA downstream 139916 24486410 ~ 24491614 (-) True XLOC_034718
TCONS_00067566 mRNA downstream 158539 24457191 ~ 24472991 (-) True XLOC_034717
TCONS_00067575 mRNA upstream 36385 24681278 ~ 24699985 (-) True XLOC_034723
TCONS_00067576 mRNA upstream 69947 24714840 ~ 24719655 (-) True XLOC_034724
TCONS_00067577 mRNA upstream 170916 24815809 ~ 24828887 (-) False XLOC_034725
TCONS_00067578 mRNA upstream 171363 24816256 ~ 24828296 (-) True XLOC_034725
TCONS_00067579 mRNA upstream 185683 24830576 ~ 24838400 (-) False XLOC_034726
TCONS_00067552 other downstream 438450 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067518 other downstream 1694282 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 2794664 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 2800680 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 2808003 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067584 other upstream 195808 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 646140 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 1118291 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 1146336 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067631 other upstream 1655902 26300795 ~ 26304876 (-) False XLOC_034753

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_01083369_01088304.mRNA True 1603 mRNA 0.46 9 CI01000026 1083043 ~ 1088304 (-)