RNA id: CI01000026_01083369_01088304.mRNA


Basic Information

Item Value
RNA id CI01000026_01083369_01088304.mRNA
length 1603
RNA type mRNA
GC content 0.46
exon number 9
gene id CI01000026_01083369_01088304
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1083043 ~ 1088304 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATAAGACGTAGAAAGTATCGACGGGAAGAAATAGTGGTCCTTTGTTTTAAGCAGCTTCGAGGTATTGTAAAGGGAACTAATGAAATCATGTTAAGACTACCTGCTAACAACATAATGATTGAAGTGGTGGCATCTATGGCACGAGGGCCTGTGTTTTTGGCTGGGGAGGTTTTGGAGTGTCTCATAACCTTCACAAACCCCATATCACATCTGTCTACATCTGCCAGCAGTGAGATGTTGGCTTGGGCCAGTGCTCAGATTCACTGCCAGTTCCATGCCAGCGAGAGTCGCGTGGCTCTGCCCTCTCAGGGCACCAAGCAGGACGTGCAAGCTGAGAGTGACACTGTGCTGATACCAAGCAGAGGTGAACGAGGGCAGTGTGTTCTGGACACACCGCCTAAGATCTTGTTCTGTGACCTTCGTTTGGACCCTGGAGAGAGCAAGACCTATACCTATAGTGAGGTTGTGCCCACTGACGGTCCACCCAGTTTCCGGGGTCAGGCAGTGAAATATGTGTACAAGCTCACGATTGGCTGTCAGCGAGTCAACTCACCCATCAAGTTACTGCGAGTCCCTTTCAGAGTTCTAGTGTTACATGGCATGCCAGAGCCTCCGTTCCCTCAAGATGAGGAAGTGGCTCCCTCAAACCCCTTCCTGGAAGAGGAGGAAGGAAGCCGAAGAGATACAAGACCGCTAGAAAGAGCTCTGGATATGCTAATGATCACCACCTCACGTCGATGCCCATATATGTTCAACATCACAAATGTGCGGGGAAAGGTGGCTAAGTTCTGCATCTTTAAGACTGTGTACAGGCTCGGAGAAGATGTCATTGGCACCTTCACATTCTCAGAAGGGGATATTCCATGTTTACAGTATTCTGTAAGTCTGCAAAGTGAAGAGGAGGTCCAAGAGCAGTACCAGAGACGACCCGGCCAGGCTGTCAGTGTCACTAATCATGGCCGACACCTGGAGTCCTGCTTGCACACAGCCTCCAGCCATTTCTCTCTCCCTGTACCCCTCAACGTTACACCAGGATTCACCACAGATATAGTGACGTTAAGATGGCGACTGCATTTTGAGTTTGTCACAGCACGGGAACCAGTGGAGGCACCAGTGGTTCTGCAGAATCAGTCAGAAGTCACATTATGGACTGGGGCGGAGCATGTGGATGTGGACACCTTCAGTTGGGACCTGCCAATCAAAGTGCTTCCCACCAATCCCACGCTAGCTTCATATGTTTCACAGTTCACAGGGACAAACAGCATCAACATTTGAGTATTGTTGGAAGATCAAAAAAACTAACGAGTTGTTGTTGTGAGATGTGTTGTTAGCAGTCCAAATTCTAAAGTAGCTTATTTTTGGATTTGTTTTATTGGTTCATATCTTTTGCCGTGCAATGAGATGATAATACTTTATTTAAGCTACTTTAACATTTCAGCCTTGACCAACAGACTGCTTAACCTTATGTTAAAATATCTGTATTTATTGTCTATATTTCAGTGTATGCAAATTATAATGACAAACGGTTTGTGTGGTATTTCAATTCCTCTATTACAAGGTATTTTGTACATTTCTCTATATGCAAATCATAACTGAATAAA

Function

GO:

id name namespace
GO:0034066 RIC1-RGP1 guanyl-nucleotide exchange factor complex cellular_component

KEGG:

id description
K20477 RGP1; RAB6A-GEF complex partner protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144482 lncRNA downstream 56885 1018851 ~ 1026158 (-) False G127174
TU144481 lncRNA downstream 56885 1022767 ~ 1026158 (-) True G127174
TU144475 lncRNA downstream 88264 994521 ~ 994779 (-) True G127171
TU144453 lncRNA downstream 136213 945475 ~ 946830 (-) True G127152
TU144456 lncRNA downstream 139655 942761 ~ 943388 (-) False G127152
TU144573 lncRNA upstream 173886 1262190 ~ 1262404 (-) True G127240
TU144611 lncRNA upstream 299675 1387979 ~ 1388196 (-) True G127275
TU144614 lncRNA upstream 305103 1393407 ~ 1393608 (-) True G127278
TU144615 lncRNA upstream 311002 1399306 ~ 1400928 (-) True G127279
TU144619 lncRNA upstream 320626 1408930 ~ 1410546 (-) True G127282
CI01000026_01055165_01071118.mRNA mRNA downstream 11925 1054915 ~ 1071118 (-) True CI01000026_01055165_01071118
CI01000026_01011341_01018429.mRNA mRNA downstream 64574 1010618 ~ 1018469 (-) True CI01000026_01011341_01018429
CI01000026_00986386_01002180.mRNA mRNA downstream 80863 986182 ~ 1002180 (-) False CI01000026_00986386_01002180
CI01000026_00909358_00915047.mRNA mRNA downstream 167996 909190 ~ 915047 (-) True CI01000026_00909358_00915047
CI01000026_00904115_00907709.mRNA mRNA downstream 175289 903924 ~ 907754 (-) True CI01000026_00904115_00907709
CI01000026_01112372_01124229.mRNA mRNA upstream 23617 1111921 ~ 1124229 (-) True CI01000026_01112372_01124229
CI01000026_01135025_01137262.mRNA mRNA upstream 46349 1134653 ~ 1138260 (-) True CI01000026_01135025_01137262
CI01000026_01159823_01161906.mRNA mRNA upstream 70858 1159162 ~ 1161906 (-) True CI01000026_01159823_01161906
CI01000026_01211595_01215959.mRNA mRNA upstream 123291 1211595 ~ 1215959 (-) True CI01000026_01211595_01215959
CI01000026_01220096_01224123.mRNA mRNA upstream 131792 1220096 ~ 1225959 (-) True CI01000026_01220096_01224123
TU144310 other downstream 80454 999847 ~ 1002589 (-) True G127016
TU144773 other upstream 647473 1735777 ~ 1736106 (-) False G127418
TU146987 other upstream 2292481 3380785 ~ 3487020 (-) True G129357
TU147118 other upstream 2582270 3670574 ~ 3670884 (-) True G129476
TU147383 other upstream 3278992 4367296 ~ 4373069 (-) True G129658
TU147520 other upstream 3724746 4813050 ~ 4819282 (-) False G129750

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067573 False 1984 mRNA 0.46 9 NC_007118.7 24631530 ~ 24644893 (-)