RNA id: TCONS_00067556


Basic Information

Item Value
RNA id TCONS_00067556
length 2135
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_034712
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24196575 ~ 24204665 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTCGCTCTCACATAACCCTAACGAGGAGCTGCGCGTCTACAGTTATAAGCAGTGTGATACGGTTGGATCAGTCTCAAGGCCAATCTCTCCAGCAGCCATGCCTCGCATTGAAAATGACATCAAACTTGACTTCAAGGATGTGCTGCTTCGACCCAAGAGGAGCACTCTCAAATCTCGCAGTGAGGTGGATCTCATGCgcagttttacatttagaaactCAAAGGGCAGTTATCGTGGGATTCCCATTGTTGCTGCCAACATGGACACAGTGGGGACGTTTGAAATGGCCTTAGCTTTACATCAGtttagcCTCTTTACAGCCATGCAAAAGCATTACGGTGTTGACGACTGGAAGGAGTTTGCAGCCAAGCACCCAGAATGCTTAGAGAGTGTTGCAGTCAGCACAGGGACGAGTGAAGGGGACTTTGAGAAACTGGGGGCCATTGTTGCCGCTGTGCCTCAGATTCGGTACATTTGTGTGGATGTAGCCAATGGCTACTCTGAGCACTTTGTCAACTTTGTAAAAGACGTGAGGCAAAAGTTCCCCACGCACACTATCATGGCTGGTAACGTGGTCACGGGAGAGATGGTCGAAGAGCTGATTCTTGCTGGGGCTGACATTATCAAAGTGGGCATTGGACCAGGCTCTGTGTGCACCACTCGTAAGAAGACCGGTGTGGGTTATCCTCAGCTAAGCGCCGTCATCGAGTGTGCTGACGCTGCTCACGGCCTGGGTGGACACATCATATCTGATGGGGGATGTACCTGCCCAGGTGATGTCTCCAAGGCTTTTGGGGCGGGAGCTGATTTTGTGATGCTTGGAGGAATGCTGGCTGGTCATTGTGAGAGTGGAGGTGAAGTCATAGAGAAAAATGGCAAGAAATACAAGCTGTTCTATGGCATGAGCTCAGACACGGCCATGAAGAAGCACGCAGGAGGCGTAGCAGAGTACAGGGCATCTGAGGGTAAAACAGTTGAAGTGCCTTATAAAGGGCCCGTGGACGTGACGCTGAGAGACGTTCTGGGTGGAGTTCGCTCCACCTGCACTTATGTGGGCGCTGCTAAGCTGAAAGAGTTGAGCCGTCGTACCACCTTCATTAGGGTGACCCAGCAGCTCAACACAGTGTTCGGTAATGATAATTGAGACATGTTGGTCCACATTGGGCCAACTGATGCCAAATCCATGCGAAGGTCATTTTATCCTGGGTGCGGTCAAGTAGGCACACATGCATGttcacatacgcacacacacacggtcaTTTAACataatttctgtcgtgttttgttcgtttttgtttgtctgtttaaactcggtcttggagggccggtgtcctgcaaagtttagtttcaaccccaattagacacacctgggctagctaatcatgctcttactaggctttctagaaacatccttgcaggggtgttgaggcaagttggagatcaaatctgcaggacaccggccctccaggaccgagtttggacacccctgccttagatCAAACACCTCATATATTATCCAGATAACTGGGTACTATTTTAGACTTTGTTGTCAATTTGAAACGAATGTCTCTCTACGCTCAATGTCTTACATTCAGATACTTTCTGATTTCATAATCATTCCTGGACCAACTCAGATCTTTAAAGGGTTATTAAAGTATTAGCAGTCTATTATATTACATGATGACCATTATATATTAGCAGTTTATAATATAGCATATATTTAAAAACCAAAGCCAAGTTGTTGTTTTCAATGCTTTTAACATTTCCTCCAGCGTCGTCTATGTTACAGATGCAGCGTTAAACAATCTTTAAGTCTTAATCTGTTTTTGTCACAGTATTGGCATGATTTGATGCATTTGAGCCTGGTTTGAACATTAGACAGCTTTTATAGTAGTTTGCTTAACTGAtgattaactttaatttaatttaatttgtatcttttttgCTATTATATACTGTAGTTCATACGTTTGACATTCCTTTGTGTCCTAATACATTGTCATTAATGTTGCTTGGGCAGATTTAATTTGACCTATATTGAACTTTTAATGACGATGAATCAAATTTTGTTCGTATATTCGGGCGTTTAGCATTCCTGTGTTGTTTTGTGGAAATAAATGAGTTGGATAATCA

Function

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:1902560 GMP reductase complex cellular_component
GO:0003920 GMP reductase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1238 Predicted to enable GMP reductase activity and metal ion binding activity. Predicted to be involved in purine nucleotide metabolic process. Predicted to act upstream of or within nucleotide metabolic process and purine nucleobase metabolic process. Predicted to be part of GMP reductase complex. Orthologous to human GMPR2 (guanosine monophosphate reductase 2).

Ensembl:

ensembl_id ENSDART00000167141

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067545 lncRNA downstream 127561 24058768 ~ 24069896 (-) True XLOC_034707
TCONS_00069204 lncRNA downstream 247772 23946001 ~ 23949685 (-) True XLOC_034702
TCONS_00069203 lncRNA downstream 290968 23903295 ~ 23906489 (-) False XLOC_034701
TCONS_00067536 lncRNA downstream 291031 23903527 ~ 23906426 (-) True XLOC_034701
TCONS_00067535 lncRNA downstream 293304 23902916 ~ 23904153 (-) False XLOC_034701
TCONS_00067559 lncRNA upstream 155482 24360147 ~ 24364826 (-) False XLOC_034714
TCONS_00067560 lncRNA upstream 157641 24362306 ~ 24364715 (-) True XLOC_034714
TCONS_00067563 lncRNA upstream 173556 24378221 ~ 24390807 (-) False XLOC_034716
TCONS_00067564 lncRNA upstream 175519 24380184 ~ 24390822 (-) False XLOC_034716
TCONS_00067565 lncRNA upstream 175632 24380297 ~ 24390815 (-) True XLOC_034716
TCONS_00067553 mRNA downstream 4377 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067554 mRNA downstream 4406 24187609 ~ 24193051 (-) True XLOC_034711
TCONS_00067548 mRNA downstream 15680 24172987 ~ 24181777 (-) False XLOC_034710
TCONS_00067557 mRNA upstream 3946 24208611 ~ 24236364 (-) True XLOC_034713
TCONS_00067558 mRNA upstream 152566 24357231 ~ 24364536 (-) False XLOC_034714
TCONS_00067561 mRNA upstream 162297 24366962 ~ 24373662 (-) True XLOC_034715
TCONS_00067562 mRNA upstream 170405 24375070 ~ 24390879 (-) False XLOC_034716
TCONS_00067566 mRNA upstream 252526 24457191 ~ 24472991 (-) True XLOC_034717
TCONS_00067552 other downstream 4377 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067518 other downstream 1260209 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 2360591 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 2366607 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 2373930 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067584 other upstream 636036 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 1086368 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 1558519 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 1586564 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067631 other upstream 2096130 26300795 ~ 26304876 (-) False XLOC_034753

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_00767991_00775879.mRNA True 1101 mRNA 0.50 10 CI01000026 767991 ~ 775879 (-)