RNA id: TCONS_00067554


Basic Information

Item Value
RNA id TCONS_00067554
length 1569
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_034711
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24187581 ~ 24193080 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGTTTGCAGCAGTCCACAGGATGCAGAGCAGTTCCAGTGTTCAATATGCCAGGACATCTTCACTGACCCGACAACCATTCCATGTGGACACAACTTTTGTATGGTATGTATCTGTCAACACTGGGACAGCAGTAGGAAGACAAGCTGCCCCCTttgcaaaaaacattttaacttgacACCAGAGAGTCTGGACATCAACAGAGAGTTCAAGGAGATCATTGAACGACTGAAGAGGGTGGAAAGTCCTGTTCAGCCTGGAGTGGTAGCGTGTGATGCCTGTACAAAAATAAAGAGAGGAGCTTTGAAGTCTTGTCTCCATTGTGAAGGATCTTTCTGCAAAACTCATCTTGAACCTCATAACACCGTAGCCAAACTGAAGAAGCACAGACTTATCAATCCTGTGGAGAATCTGGGCGATTATATCTGCTCAAAGCACGAGAGACCGCTGGAGCTGTTCTGCAGAGATGaccagatgtgtgtgtgtctgtcgtgTACGATAAAAGACCACAGAACACACAACACTGTCCCAGTAGAGGAGGAGAGCGAAGAAAGAAAGTCTCAGTTTGGGAGAAAGCAGGCCGAGGTTCATTTGATGATCCagaacagaataaagaaaattgAAGAAATTAAAACCTCAGTGACGATCAGCAAGGTTAAAAAAGAGAGAGCCGGCTATGTCGAGGTGTTTGCTGATCTGATGCGCTCCATTAAGAGATGTCAGCGTGAGCTGCTGGAGGTGATGGAGCAGAAGCAGAAAGCAGCAGAGAAACAGGCTGAAGATCTGATTAAAGAGCTGGAGCAGGAGATCAGTGAACTGAAGAGGAGAAACTCTGAGCTGGAGGAGCTCTCACACACTGAAGATCACCTGCACCTCCtacagATTTATCCATCACTTTGCAGGCCTTTAGACACCAAGATCTGGACTGGGATCAGTGACACTCATATGAAGGAGGATGCTGTGAGAAGAGCTATTACAAAACATCAGGGATTTCTCAGTGATGTAATGGTGAAAATGACAGGAATTGTGAATGTGACTATGGATCCTGAAACTGCTCACCCCAAACTCTTCTTGTCTGAGGATGACAAACAAGCTGAATTTGGAGAAACACGTCAGCCTGTCCCAGACAATCCGTGGAGGTTTAATAAGTGTCCCAGTGTCCTAGGGAAGGAGGGATTCTGTTCTGGCAAGTTTTATTTTGAGGTGCAGGTAAAAGGGAAAACGGAGTGGGATTTAGGAGTGGCGAGAGAGTCTGTTAACAGGAAGGGAATAATTACTCTGAGTCCCAGGAATGGACTGTGGACTCTGTGGTTGAGGAATGGAGCTGAGTATAAGGCCTgtgactgtctgtctgtgtctctcTGCCTGAAAGTGAAGCCCCAGACGGTGGGTGTGTTTGTGGATTATGAGGAGGGTTTAGTCTCATTTTATGATGTAGAGTCCATGTCTCATATCTACTCGTTCACTGGTCAGTCTTTCACTGAGAAACTCTATCCATATTTCAGCCCAGGCTTTAATAATGGAGATCAAAATTCAGACCCACTGATCATTTCACCCCCCCAGTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-7 Predicted to enable zinc ion binding activity. Orthologous to several human genes including TRIM48 (tripartite motif containing 48); TRIM49B (tripartite motif containing 49B); and TRIM60 (tripartite motif containing 60).

Ensembl:

ensembl_id ENSDART00000169737

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067545 lncRNA downstream 117713 24058768 ~ 24069896 (-) True XLOC_034707
TCONS_00069204 lncRNA downstream 237924 23946001 ~ 23949685 (-) True XLOC_034702
TCONS_00069203 lncRNA downstream 281120 23903295 ~ 23906489 (-) False XLOC_034701
TCONS_00067536 lncRNA downstream 281183 23903527 ~ 23906426 (-) True XLOC_034701
TCONS_00067535 lncRNA downstream 283456 23902916 ~ 23904153 (-) False XLOC_034701
TCONS_00067559 lncRNA upstream 167096 24360147 ~ 24364826 (-) False XLOC_034714
TCONS_00067560 lncRNA upstream 169255 24362306 ~ 24364715 (-) True XLOC_034714
TCONS_00067563 lncRNA upstream 185170 24378221 ~ 24390807 (-) False XLOC_034716
TCONS_00067564 lncRNA upstream 187133 24380184 ~ 24390822 (-) False XLOC_034716
TCONS_00067565 lncRNA upstream 187246 24380297 ~ 24390815 (-) True XLOC_034716
TCONS_00067548 mRNA downstream 5832 24172987 ~ 24181777 (-) False XLOC_034710
TCONS_00067549 mRNA downstream 5863 24176602 ~ 24181746 (-) False XLOC_034710
TCONS_00067551 mRNA downstream 5877 24180284 ~ 24181732 (-) True XLOC_034710
TCONS_00067550 mRNA downstream 6450 24176605 ~ 24181159 (-) False XLOC_034710
TCONS_00067547 mRNA downstream 37939 24124289 ~ 24149670 (-) True XLOC_034709
TCONS_00067555 mRNA upstream 3524 24196575 ~ 24204200 (-) False XLOC_034712
TCONS_00067556 mRNA upstream 4406 24197457 ~ 24204665 (-) True XLOC_034712
TCONS_00067557 mRNA upstream 15560 24208611 ~ 24236364 (-) True XLOC_034713
TCONS_00067558 mRNA upstream 164180 24357231 ~ 24364536 (-) False XLOC_034714
TCONS_00067561 mRNA upstream 173911 24366962 ~ 24373662 (-) True XLOC_034715
TCONS_00067518 other downstream 1250361 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 2350743 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 2356759 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 2364082 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067455 other downstream 4231417 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067584 other upstream 647650 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 1097982 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 1570133 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 1598178 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067631 other upstream 2107744 26300795 ~ 26304876 (-) False XLOC_034753

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00012316 True 1877 mRNA 0.52 8 CM030138.1 15941632 ~ 15984389 (+)