RNA id: TCONS_00067548


Basic Information

Item Value
RNA id TCONS_00067548
length 2290
RNA type mRNA
GC content 0.39
exon number 10
gene id XLOC_034710
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24172987 ~ 24181777 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTATCAGAATGCCATTTTGTTTCCTGCTTTATTCAGAAAGCTGCTTGAAGGCTTGGTGATCATAATGTGATAGAGTGTATTCTCCGGCAACACCCTGTTATAAATGCTGGTGGATTGTAACACAATGGCAGAACCACCAAAGTACAGTCTTGGAAGAAGAGATAGTATTGATCTGCCTCCATTTATGGGTCTCAGTAAAAGTCTTCATCTGACCGAAGAGTGCCAGTGTCCAGTGTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGACCTGCCTGATACAATGCTGGGACAACAGTCAGGATTACAGATGCCCATTGTGTAAAGAAACCTTCAGCAAAAGACCTGAAGTAAAGAGCAACACAGTTCTTAGAGAAATTGTGCAAATCTTTATGGACAGCACAAAGGAAGACCCATTACACACAGACGGTCCTCTGTCTGAAGAGCTCCAGTGTTCAGTGTGTCTGGATGTGTTCAATAATCCAGTGACCACTCCATGTGGACACAACTACTGTAAGACCTGCCTGGAAAAGTGCTGGGACTACAGTCACGTCTGCATCTGTCCATACTGTAAAGAGACATTCAGTAATCGCCCTGATCTAAAGTGCAACACAGCTCTTAGGGAGATTGTGCAGCTCTATGAGAAAAACACAGATTACAAAAGGGAGCAGCCAATGGAGACAGAATATTCAACGTCATTGGGAACAGCAGTCCATGAGGAGCCTCTGTGCAAACCTTTAATGATGGCTTGCTCATGCTGTGTCGTGACTGAAAACCCTGCATGCTTTATTTGTCTGGAGTCTTCAATCGATGTTGTGTGGACTCCATGTGGACACAGCTTCTGTAAGGCCTGCCTCAAGGAATGCTGGGAAATCAGTCATGACAGCAGATGTCCATGCTGTAAAGAAAGCTTCACTGAGAGAGAAACTTCACTTCTCGAGCAGCTGCGGTCTCAATCTGAGTGCTCTTACCAAATGAAAGAAGTTGCAAACATAAAGGAGGTCATAATGATCAATCCTGAAATGATCCAGAAGCTTGACAGAGCTTTGGAGATGTTTGGTGGAGATGATTGTGTGTCTTGTGTTGAGGGAGaccacaaaacaaacaacactcGTTCTGCTAAAGACGAGAGTGAAAAGAAGAAGGATATTAATCCTAAAATAATCCAGAAACATGGAGCTTTGGGAATGTTCAGCTTGGGTGATCAGACATTTGAGCGGTTTTGCGTTGAGGAAGACCACGAGATCCACAATACTGTTCCTGTAAAAGATGAGAATGAGAAGAAGAAGGTGAAGATGCACGAGCTTGTGCAGCAGATGATGGAGGGCACAAGGAAGAGAAGTTCTCTAAAGGGAGACAAATTCTCTGAAATTAAAAGCAAAaaaaacaaagcaaaagaagCAGCAGATGACATTGAGCTCTGCACTGATCTGAATTACTCCACAGAGAGAGGTCAGATGATGCTTTCTGAAAGCTGGATGAAGACATCTGGATGAAGAGTCATTTCTGCTTTCATCCTTTTGGATCGACAGGATGTGCTTTTTGTAGAAAGGCTAAAATGAATGTATTGCAAGTTCTTTTAAGCTTACAGACAAATTCAATTGCTTCTTTTAATCCAATAATCTCATCAATATATTcagaataatgtatttttaaaaaggtaaaaaaaaaaactttatatctCATATATTagttgctaatggtctaatcttaatcaatgatttatgctaagctaaacgtgCTCCTGCTAGACCCGGAGATGGGCTGAATGGtttcaaaaatggtcaaactcaactgtttacctcTAGGGGACTTTTACAGTGAGTCTATTtgcaaaaaagtggagtgttcctttaaagttAATCATTCGTATGTTTTGATAAAGAGTGTACACACTGGTTTTTGGCTCTTGCATTGCTGTCTATTGATGTGAAAAATGTGTTCAACCTTCTGCTCAACCAATTGAACATCACTCAAATTAAGGCTCCTGTTTATCAAGGAAGGGCTAGAGTTCAAGCATGCAGACAGAAGACAATTGTTTCATAATCTACTTTGGAAatctttaattaattatttcccTGATATTCTATACCTTTAAATCATAAccaaatatttgattaaaaaactaCTGTAATCTTGTTTTATAAATACATTCTGAGAATTATGTTTTCCTGTCCAGTGacttttacaacatttttagaaatatttctacatgaatgactgaaaatgtataattattttgtactattaaactatatattacaga

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-103 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000131053

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067545 lncRNA downstream 103091 24058768 ~ 24069896 (-) True XLOC_034707
TCONS_00069204 lncRNA downstream 223302 23946001 ~ 23949685 (-) True XLOC_034702
TCONS_00069203 lncRNA downstream 266498 23903295 ~ 23906489 (-) False XLOC_034701
TCONS_00067536 lncRNA downstream 266561 23903527 ~ 23906426 (-) True XLOC_034701
TCONS_00067535 lncRNA downstream 268834 23902916 ~ 23904153 (-) False XLOC_034701
TCONS_00067559 lncRNA upstream 178370 24360147 ~ 24364826 (-) False XLOC_034714
TCONS_00067560 lncRNA upstream 180529 24362306 ~ 24364715 (-) True XLOC_034714
TCONS_00067563 lncRNA upstream 196444 24378221 ~ 24390807 (-) False XLOC_034716
TCONS_00067564 lncRNA upstream 198407 24380184 ~ 24390822 (-) False XLOC_034716
TCONS_00067565 lncRNA upstream 198520 24380297 ~ 24390815 (-) True XLOC_034716
TCONS_00067547 mRNA downstream 23317 24124289 ~ 24149670 (-) True XLOC_034709
TCONS_00067546 mRNA downstream 60503 24100155 ~ 24112484 (-) True XLOC_034708
TCONS_00067544 mRNA downstream 125671 24041635 ~ 24047316 (-) True XLOC_034706
TCONS_00067543 mRNA downstream 125957 24041501 ~ 24047030 (-) False XLOC_034706
TCONS_00067542 mRNA downstream 125966 24041175 ~ 24047021 (-) False XLOC_034706
TCONS_00067553 mRNA upstream 5804 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067554 mRNA upstream 5832 24187609 ~ 24193051 (-) True XLOC_034711
TCONS_00067555 mRNA upstream 14798 24196575 ~ 24204200 (-) False XLOC_034712
TCONS_00067556 mRNA upstream 15680 24197457 ~ 24204665 (-) True XLOC_034712
TCONS_00067557 mRNA upstream 26834 24208611 ~ 24236364 (-) True XLOC_034713
TCONS_00067518 other downstream 1235739 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 2336121 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 2342137 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 2349460 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067455 other downstream 4216795 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067552 other upstream 5804 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067584 other upstream 658924 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 1109256 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 1581407 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 1609452 25791229 ~ 25791355 (-) True XLOC_034738

Expression Profile

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