RNA id: TCONS_00067557


Basic Information

Item Value
RNA id TCONS_00067557
length 6116
RNA type mRNA
GC content 0.39
exon number 11
gene id XLOC_034713
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24208611 ~ 24236364 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATAGCCGCTCGTGACGCGTCATGGGGGAAGGAGGGGAGGAGGCGCGACGGTACATATGGAGGCGGGCTGGAGGACTTGACATATGGAGTAAATACTACAGACTGTTGGAGGCGCTTGGACCACTGGTGCTGTGGATATCACTGGAGACGCCAACTGTTTTCAGTGCGCGGACACTGATCTACACAGGGACTCTTCGACAATACGATGCGCGCGTTGTTTTAGGAACGAGGAAGCATCCGATTTATAACAGGTAACAGTTAACGTTACAGGAAGGAAAAAAGTGGGACAAATACGAAACAGGTTTTCGGCCTCACGAGCGCGCTGTTTTAGGTTTAAATTGCAGATCAAATCCTGGATAATCTTCATCACTGACGCAACAAACGGACAATTAGCGCTTAAGGTGTTTTTgtagttttcttatttttgtttaaaagtagTGCGTGACTTCACTGTCAAAACGGAAATCTTACATTTCAATGACATTGAATAGTGTGCctagtttttaaattcattttaaagccTCGCATTGCAGTCGCCTATCTTTACTTTGATATTTCCACgtgctataaaataaaatcaatagcgACACATGTCTCAGAGCAGCTTCATGTAGATAAAGGGAAGATACGGTGCCGTAATTCCTCGAGACAGTATTCTGGCTGTATATGTGTACCCTGGCGGTCGCTATCTGAGATCTGACCGGCGGTAGCCTATAAGTCAAGCGCTGCTCAAGCATCATCGCTCAATATCGAGGATTGGACATCTCAATTACCAAAATGACGGATGGACCGAGACAAAGAGGCAGCGCAGCCCCGAGCACCGCCAGCGAGGATGGAGGAGCAGCAGACACGGGCAATACAGCAGGGCAGTCAGTGGCGCTGAAGAAAGAGATCGGCCTCGTCAGTGCGTGCGGCATTATTGTCGGTAACATCATTGGCTCTGGAATCTTTGTCAGCCCAAAGGGAGTGTTGGAAAATGCCAGTTCGGTAGGCCTGGCCCTCATTGTATGGATTCTTACAGGCATTATAACAGCGATTGGCGCACTCTGCTATGCTGAGCTGGGCGTTACTATACCAAAATCTGGAGGCGACTACTCTTATGTCAAGGACATCTTTGGAGGACTTGCAGGGTTTCTGCGATTATGGATTGCTGTATTGGTAATCTACCCTACTAACCAGGCAGTCATTGCTCTCACCTTCTCCAACTACGTTCTGCAGCCTCTATTTCCCACCTGCTTCCCCCCAGAGAACGGTCTGCGGATACTCGCTGCCATCTGCTTGTtGCTGCTGACTTGGGTGAATTGTTCCAGCGTGCGCTGGGCTACAAGAGTACAGGATGTCTTCACCGCAGGGAAACTTCTGGCACTCATTCTTATCATCATCATGGGCATCGTACAAATCTGCAAGGGCGAGTATTACTGGTTGGAGCCAGCCAATGCTTTCGAACCATTTCAAGATTATGATGTCGGTCTGATTGCTCTGGCATTTCTACAGGGGTCCTTCGCCTACGGTGGCTGGAATTTCCTCAATTATGTCACAGAGGAACTGGTCGACCCTTATGTGAACCTCCCCCGTGCTATCTTCATCTCTATTCCCCTTGTGACCTTCGTGTACGTCTTTGCTAACATCGCCTACGTCACCGCCATGAGCCCTCAGGAGCTGCTGGCATCTAATGCTGTAGCTGTGACGTTTGGTGAGAAGCTGTTGGGGGTGATGTCATGGATCATGCCCATCTCTGTGGCCTTGTCCACATTTGGGGGGGTCAACGGCTCCCTGTTCACCTCCTCTCGGTTGTTTTTCGCGGGTGCTCGTGAAGGCCATCTGCCTAGTCTGCTGGCTATGATTCATGTGAAGCGCTGCACTCCTATTCCAGCCCTGCTCTTCACTTGCATTTCAACACTTCTGATGCTGTGCACCAGTGACATGTACACACTCATCAACTATGTGGGTTTCATCAACTACCTCTTCTACGGTGTCACTGTTGCTGGGCAGATTGTGCTGCGGATTAAACAACCAGATATGCACCGACCAATTAAAATCAGTCTGGTGTGGCCTGTGATCTACCTGCTCTTCTGGGCCTTCCTGCTGATCTTCTCTCTGTACTCGGAGCCTGTGGTTTGTGGCATTGGCTTGGCCATCATGCTTACTGGAGTCCCTGTCTATTTCTTGGGCGTTTACTGGGACAACAAGCCCCAATGTTTCAATACATTTGTTGACAAGATGACATACCTGGGCCAGAAATTCTGTGTGGTGGTGTATCCAATGGAGGAAGTAAAGAAAACCGATGAGTCTGCAGAGGGGATTGAGCTGAAGGAGCAGACTGCTCCACTGTCAGCAGAGGGCGAGGAGACGCCCAAATCAGCCGACTGCTGAAGagacacactccttcacacataTTCAAACAGACACTGGAAATCAAACTCAGATTGTTCACATACCTCTATAGTTTGCCTTTTGTATAAAGAGGGGGTTGCACTGGGGGCTGAAGCTCAGGAGAGAGTCATGAACAGAGACCAGCTGCTCCTCGATCTCTGTTCGCTGGTTTCTTAGCAGCTGCTTTCTACTCCATCGGCTGTGCAACAGaattacaacattaaaatgtgAGATAAGGAAAAGCTCTAGAATGTATAAAGTACAAGCACAGGTTTTGGGATTAAAAAGAACACCTTTCTGGACATTCTGTGAGACACAGGAGAGTTACAGATCGTGCCAAACTACATCATGGCTTCGCCTGAAACGCCAGGgctcgttttatttatttatttattaagtacaTTCTAATGTTATAATTCTTTCccctctttatttttatattttttaaatacttctcaTCATTTTTTTAACAAGCCAAAGCTgtattattaattagcaaatttcTCATTTCAAGTGTATTCCACCACACCAAAACACtctttttaaaacgtttttatattttgatatatttttaattgtaatagtTTGATCATCTTCCGTTGTCATTAtagaattgttgttgttttttttttaggtttttctgttttctttactCTGGGATCTCTTGTTTTTAATCATCATGTTTTAAGGCATATACATAAGAACCGATTGTGATGGTTCAGAGTAGTTTTCTATCAGGTTACTCTGATACTTATACAATTCCAGCTCTTTTATTTGCCTTAAAGCTTTTACTTAACTGTATAAAGTTTTCAATGTTAAAGAGTATTTTTCTTTCGGATATTTTTGAAGGTTAAAAGTAtgagaaaatgagaaaaaaaaaaaaaacgtcaaagTTGCTATCGTGAACTCGGCTGTTGTAACAGTGTCTTCATTCTGTGGACTTCAGACAGAATTTAGCTTCTCATGTCTCCGGCTTTACAGCCAGAAATAACCCCACAGTTCACTTTCACGCATCTTAATTATTTCAAAAGTTTATACACAGATGTAGATTAAAAATTGCACAGTGGTTTGGTTATATATGtgaagaaacaaaaaaacagtggTGCAAAGTTAGTGTATGTGATGTATCTGAAAGCCTAAAATATAATAGCTTCGGGATgatcatttattttgtaaatgttcaaCAAACTTGAAATCAACTGACATTGTTGAATCGTGTCATattaatgcataaaatatatgataaTCGTGTGGATGGCCTGTAGATATTAATGTAGCTGCAATAGAAGGGACAGAATCAGTTGATCAAAACTAACAAACCTTCACTCGTAGGATGATTAATGGTATTACTAAACAATAAAACGACACACCAAAATGAAGTCTAACAGAtaattaattttcttaaaaaagataataattataTTGATATATGCTCAGTCAGATCAAGTGTGTGTCAAGGCAAGGATTGTAGTGGTCACGAAGTATTTTTGTATTTCATGTTGGTGCCTCTGTGTTGATGTCAAATCTTTATCCACTTGTGAAGACTATGGAAGAGTGCCAGTTGTTCTTCGTTTCATTTTATGCTAATTTGTAACGTGTAGGCGCTGTATAAAAAGCATTATATTATGTAAATCACGGTGTAATTCACTGCACATCCATTTTAATGAGCTAAAGCCTCCCAACCATCCACATTTCTTTGACACTATTAATATAAAGTCTACAAACTTCGCACTTACACAATAAACACTGCCTTTTGGGTTCCTCTGTCGTGGTCGTCGACGAGGCCTGTCGTTACCAATTCACCACAGACTGACTGAATAACCAAAGGTGTGCATTGAGCATCTTTGGTTGTTGTAATGCTGCTCCTGAGCTGTGCCTCAGTATCCAGCACTGCCTACCGTGTGctaaacacaaacacagtgtagatattaaatataaacatacgACTCTGATTGTGCTGCAATTTTAAGCTTTCATATCCACTGGCGATACCAAAAGCCAAAACAAATTCTGGTTAATTTTCACCATCGATAACAAATGATTGATGTCAATATTTTGAATGTCACAACTGTATAAATCAGCAAGAGAAAGACTTTTACAGACTGTATTCAGATATAACTTACAATCTGAGGCGATAAAGCTCTGTTTGCCACTTACACGGAACAGGGGGTGAACGATTTGTATCAGAGTCTTCTTGTTTGTTAtagtttttgtatttgtttgaacAGTATATATATTACAATGAATAAATCTATATGCTGAACTCACGAAGGCCTTTGTTTATTTCACGGTTGACTCGAAACAATTGAGCTGCACTGCCACCTGCTGGATGATTACGATGACCTCCAAAAGTATATACAAAAGGACCAAATACActtccttttattattattattattattattattattattattattattattattttgcctttcaaaaacataacaatttaggCCAAACTCAAACCAAATATACTCTTGCACAAACTGACTGAGACATGTCAGatatacagaaaataaaatataaaaccataaaattaacaaatatacaaataaactaaaaaatgtacaaaatgacTTAACGAGAAAGAACAACATACCGTGCAAACATCAAACTCTGTAAGGGGTTAAATAAAACCATATTCTAGAAACAAATCAGACAACTATTTAGCCTTCTCACCCTTTATTACTTTTAAAGCTTCTATATAGCTGGCAAACTCCTTTTTAAACAATCACAATAAATTGAGGAGCCGTTTTCAAAATTTAGCATTTGTGAATCAAAAATGTAACTGAAATGAGTAAACAATTTGCAGTTAAGTCATCATTTTTGATGTccaagcatgtgtgtgtttgcaagtacaattttaaacaggaaaaatcaagagaaagctaaaaatatatacaattttacagacattttgttgtttttagtagTTGACGATTTCTTTTTTCAATAATTCATTGGAATTTAACTGTATTACCTTCTATTCCTAAGTATGTTTGGTGACAAAACTCTTATTATAATAGATATCACAATTCAATAAATTAgctttaaatgcatcaaaacgTATGGGCTACATATTTTTTCAAAAGGGGGTGTACCCATTTATTCTGAGAACtgagtaaaaaaaatatgaatttaaaatattttaagaattatatttacatttatttacttatttgtttacccTCATATTTAtttgctctttttcttttcttttttgtgtacttttatttattttcacatttatatatttaagtatttatttattgcatacaTTTTTAGTACTACTTTTCTTCATCTTTATGGGGTAACAAGGAGCAAATGTTTTTACCACAAGAATAGCaatcaaatacagtaaaaaaaaaaaaaaaagtaaagagaaagtaaaaagtaaagtacATTAACATCACTTTAcaaaaaagtatacatttttaaatcttcCTTTTCCATGGGATGTCACAGAAAGCATGCATGCATATGAACAGCAATTacaatagagttaataaatacaGCTACTATTAGTTTTTTAATGCTTTGCTAATTTTAGATATCAGGACTTGAGCTCCAGGTGGGCAGTACAGATCTACTGGTGCATTTAATCTTGTTTATCTATTGTCTTGTAAATATCTGAGTGTTACCCATCCTCAGGCTTCATAACTGATTTCAATTGtgtattacattttttcatatagtATTGTTACTGTTCACTTTCAATAAAACAACTCAATATGCAATA

Function

GO:

id name namespace
GO:0015804 neutral amino acid transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006865 amino acid transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015175 neutral amino acid transmembrane transporter activity molecular_function
GO:0015179 L-amino acid transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121120-2 Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and neutral amino acid transport. Predicted to act upstream of or within amino acid transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC7A8 (solute carrier family 7 member 8).

Ensembl:

ensembl_id ENSDART00000010124

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067545 lncRNA downstream 138715 24058768 ~ 24069896 (-) True XLOC_034707
TCONS_00069204 lncRNA downstream 258926 23946001 ~ 23949685 (-) True XLOC_034702
TCONS_00069203 lncRNA downstream 302122 23903295 ~ 23906489 (-) False XLOC_034701
TCONS_00067536 lncRNA downstream 302185 23903527 ~ 23906426 (-) True XLOC_034701
TCONS_00067535 lncRNA downstream 304458 23902916 ~ 23904153 (-) False XLOC_034701
TCONS_00067559 lncRNA upstream 123783 24360147 ~ 24364826 (-) False XLOC_034714
TCONS_00067560 lncRNA upstream 125942 24362306 ~ 24364715 (-) True XLOC_034714
TCONS_00067563 lncRNA upstream 141857 24378221 ~ 24390807 (-) False XLOC_034716
TCONS_00067564 lncRNA upstream 143820 24380184 ~ 24390822 (-) False XLOC_034716
TCONS_00067565 lncRNA upstream 143933 24380297 ~ 24390815 (-) True XLOC_034716
TCONS_00067556 mRNA downstream 3946 24197457 ~ 24204665 (-) True XLOC_034712
TCONS_00067555 mRNA downstream 4411 24196575 ~ 24204200 (-) False XLOC_034712
TCONS_00067553 mRNA downstream 15531 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067554 mRNA downstream 15560 24187609 ~ 24193051 (-) True XLOC_034711
TCONS_00067548 mRNA downstream 26834 24172987 ~ 24181777 (-) False XLOC_034710
TCONS_00067558 mRNA upstream 120867 24357231 ~ 24364536 (-) False XLOC_034714
TCONS_00067561 mRNA upstream 130598 24366962 ~ 24373662 (-) True XLOC_034715
TCONS_00067562 mRNA upstream 138706 24375070 ~ 24390879 (-) False XLOC_034716
TCONS_00067566 mRNA upstream 220827 24457191 ~ 24472991 (-) True XLOC_034717
TCONS_00067567 mRNA upstream 248684 24485048 ~ 24491897 (-) False XLOC_034718
TCONS_00067552 other downstream 15531 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067518 other downstream 1271363 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 2371745 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 2377761 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 2385084 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067584 other upstream 604337 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 1054669 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 1526820 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 1554865 25791229 ~ 25791355 (-) True XLOC_034738
TCONS_00067631 other upstream 2064431 26300795 ~ 26304876 (-) False XLOC_034753

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_00781130_00793571.mRNA True 2682 mRNA 0.43 10 CI01000026 779899 ~ 793571 (-)