RNA id: CI01000026_00767991_00775879.mRNA


Basic Information

Item Value
RNA id CI01000026_00767991_00775879.mRNA
length 1101
RNA type mRNA
GC content 0.50
exon number 10
gene id CI01000026_00767991_00775879
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 767991 ~ 775879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCCACGTATTGAAAATGATATCAAGCTCGACTTCAAGGACGTGCTGCTTCGACCCAAAAGAAGCACTCTCAAATCTCGCAGTGAGGTGGATCTCATGCGCAGTTTCACTTTCAGAAACTCGAAGGGCAGTTACCGTGGGATTCCCATCATTGCCGCCAACATGGACACCGTGGGGACTTTTGAAATGGCTTTAGCCTTACATCAGTTTAGTCTCTTTACAGCCATCCATAAGCATTACTGTGTGGATGACTGGAAGGAGTTTGCAGCCAAGCACCCAGAATGCTTACAGAGTGTAGCCGTCAGCACGGGGACGAGTGATGGGGATTTTGAGCGATTGGGGGCCATTATGGCCGCTGTACCTCAAGTTCAGTACATTTGTGTAGATGTAGCCAATGGCTACTCTGAACACTTTGTCAACTTTGTGAAAGACGTGAGGAAGATGTTCCCTACGCATACCATCATGGCTGGCAATGTGGTCACAGGAGAGATGGTTGAAGAGCTGATTCTTGCTGGTGCTGACATCATCAAAGTGGGCATTGGACCAGGTTCTGTGTGCACCACTCGCATGAAGACCGGCGTGGGTTATCCTCAGCTGAGTGCAGTCATTGAGTGCGCTGACGCTGCACACGGCCTGGGTGGACACATCATATCTGATGGGGGATGTACCTGCCCAGGTGACGTCTCCAAGGCATTTGGGGCGGGGGCTGACTTTGTGATGCTGGGAGGAATGCTTGCTGGTCATTCTGAGAGTGGGGGTGAAACCATAGAGAAAAACGGCAAAAAGTACAAACTGTTCTACGGCATGAGTTCAGACACGGCTATGAAGAGGCATGCAGGAGGTGTAGCAGAGTATAGGGCATCAGAGGGTAAAACCGTTGAAGTGCCTTACAAAGGGCCTGTGGAGATGACGGTGAGAGATGTGCTGGGTGGAGTTCGTTCCACCTGCACATATGTGGGTGCTGCTAAGCTGAAAGAGCTGAGTCGTCGTACCACCTTCATTAGGTCTCAGTTTGGGAGAAAGCAGGCTGAGGTTCATTTGATGATTCAGAACAGAATGAAGAAAATTGAAGAAATCAAATGCTTGGTACAGCTCAGCAAG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K00364 E1.7.1.7, guaC; GMP reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144398 lncRNA downstream 3011 764747 ~ 764980 (-) True G127104
TU144396 lncRNA downstream 8140 759621 ~ 759851 (-) True G127102
TU144395 lncRNA downstream 12849 754814 ~ 755142 (-) True G127101
TU144394 lncRNA downstream 16357 751508 ~ 751634 (-) True G127100
TU144390 lncRNA downstream 20694 746944 ~ 747297 (-) True G127096
TU144429 lncRNA upstream 92863 868742 ~ 870191 (-) True G127134
TU144438 lncRNA upstream 153116 928995 ~ 929298 (-) True G127143
TU144439 lncRNA upstream 154515 930394 ~ 930719 (-) True G127144
TU144455 lncRNA upstream 166882 942761 ~ 943303 (-) False G127152
TU144456 lncRNA upstream 166882 942761 ~ 943388 (-) False G127152
CI01000026_00750324_00762810.mRNA mRNA downstream 5181 750154 ~ 762810 (-) False CI01000026_00750324_00762810
CI01000026_00720139_00726461.mRNA mRNA downstream 41530 719120 ~ 726461 (-) True CI01000026_00720139_00726461
CI01000026_00704809_00709524.mRNA mRNA downstream 58467 704278 ~ 709524 (-) True CI01000026_00704809_00709524
CI01000026_00660711_00663647.mRNA mRNA downstream 104064 660576 ~ 663927 (-) True CI01000026_00660711_00663647
CI01000026_00649560_00650856.mRNA mRNA downstream 117135 648536 ~ 650856 (-) True CI01000026_00649560_00650856
CI01000026_00781130_00793571.mRNA mRNA upstream 4020 779899 ~ 793571 (-) True CI01000026_00781130_00793571
CI01000026_00898521_00902621.mRNA mRNA upstream 122340 898219 ~ 902692 (-) True CI01000026_00898521_00902621
CI01000026_00904115_00907709.mRNA mRNA upstream 128045 903924 ~ 907754 (-) True CI01000026_00904115_00907709
CI01000026_00909358_00915047.mRNA mRNA upstream 133311 909190 ~ 915047 (-) True CI01000026_00909358_00915047
CI01000026_00986386_01002180.mRNA mRNA upstream 210303 986182 ~ 1002180 (-) False CI01000026_00986386_01002180
TU144310 other upstream 223968 999847 ~ 1002589 (-) True G127016
TU144773 other upstream 959898 1735777 ~ 1736106 (-) False G127418
TU146987 other upstream 2604906 3380785 ~ 3487020 (-) True G129357
TU147118 other upstream 2894695 3670574 ~ 3670884 (-) True G129476
TU147383 other upstream 3591417 4367296 ~ 4373069 (-) True G129658

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067556 True 2135 mRNA 0.44 10 NC_007118.7 24197457 ~ 24204665 (-)