CI01000026_00704809_00709524 (AJUBA)


Basic Information

Item Value
gene id CI01000026_00704809_00709524
gene name AJUBA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 704278 ~ 709524 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_00704809_00709524.mRNA
ATGGATCGACTTAGCAGCAAACTGAAGCAAAAGCTCAAACTGAGTGAATCTGGAAGTGTCAAATTCAGCAAAAAGAAAAATGACTTGGCCAATGCAAATAACAACAGTAATAGCAACAATGCCAATATTGGAACCGGGACACAGATCAACGTACCCGTGAGCACGTCTCAGTTCCCTCTCTCCTGCTCCACCTCCGTAGAGGCGTGTGGACAGTCAGCCGGAAGACCTGGCAAAGTGGCCACTTCTCAGAGAATCGCACCCTCAAATACCACCTCGGCTGCGGTACCTGAGGATTGCGGGCCTGGGATCGAACATCACCCGTCTACTCTTGCCCCTCTTCGGCGCCGGTCGCCCCAGCAACGAGCATCGTGCTACTTGCCTGAAACGGTGGAGGGCCGCAGTATGTGTGACCAGTTGAGACGAGGCGACTCGGCCAGATGCGAAGGTGACCCGCTGGGGGCATACAGCCCGAATTCTCGTGTGGCCTTGAAGCAGCGCCGTTATTCTCTGGAGCTCCAGCAGCTCGTTCGCCGCCAACAGCTTCTCTCCCAGCCTCCTCCATTGTCGTCTGTACCACCTCCATACCCGACACACAGCTCGGCTCCCCGTTCATCCGCCGTGGAGCCCAGCTTCCTCCACGACTTAGAGCGTCATAAGCGCTTGTCCCTGCAGGAAGCTCTGTTCTACAAGCGTTTGAGTTCGGGTGGCGAACCCTGGGACAGTGGACGCCCTGCTTCCCTCTCTCATCCACCGCAGAGGACCCATGACAGCGGTGTAGGGGGTTTCTTCTTCCCCCCTGCACCAGCGTTGAGCCCCTGCTCTTCTTTCAGCTTACAAGAGTCCGTGCTGGCAAGCCCTCGCTCCAGTTTTGCAAGCAGTACCGCAAGTGGAGGAGGCGGTGGTGGCGGGAGTCCCATGGGAAGTCGGTGCAGTAGTAACCGGACGAGCGGCATCAGTTTGGGCTACGACACCCGCCATACACCTGGACCCCCCCAGCAGCTGCAGCTCTCCTTGACCCAACTTGGTGGCGCCACCTCGGGTCAGGCGTACTCTGTACTGGTATCAGGGAAAACAGGAGTGCCCCCTGTGGAGGTTTGGAGGGACTGTCTCGAAGCGGTTTCGGGAGGAAGCGCGCAAGACAGCCGTCACTCGTATCCACCTGCGCTGAGCACGCACACTGCAACCTTCCACCGAGCAGAACCAGAATGGGGTCCCATTGACCAGCGGGGATCAAGAGGTGATGACGTGGGTGAGAGGGCACGACACTCCGACTTGCCAGGAACCCGCTACCATCAGGAGGTCACCCGCCTGCTATTGAGAGATGCTGCCCTGGAAGGAGAAGCGTTACTTGGGGGTTTGACGTTAAAAGAACAACCTGTGTCTACCACCATTCAAGCCAGCTCTGCATCTACTCCAGCCACGGCTGGAATTCCAGGGAAATCCCTGGAAGAACAGTCAGCTGGAAGGGAGTCGTCGATATCTGCGGACAGACAGGAGTACTTCGGTACGTGTGTGAAATGTGGTAAAGGCGTATATGGTGCAGATAATGCTTGCCAGGCTCTGGACAGCCTGTATCACACCCGCTGCTTCACATGCGTTTCCTGTGGTCGAACTCTCCGAAACAAGGACTTTTACAATGTCAATGGCTCGGTTTACTGTAAGGAGGATTACATGTTCTCAGGCTTCCAGGAGGCAGCAGAGAAGTGCAGTGTTTGTGGTCACCTCATCTTGGAGCAGATTCTGCAGGCTCTAGGGAACTCATATCACCCAGGATGTTTCCGCTGTACGGTCTGCTCAAAGGCTTTGGACGGAGTGCCATTCACAGTAGACTACCTCAACAACGTCTACTGCGTCTCTGACTACAACAGGACATTTGCTCCCAAATGCGCTGCCTGTTTACAACCCATCTTACCTGCTGAGGGCAGTGAGGAGATCCTCAGGGTGGTGTCAATGAACAAAGATTATCACTTTGAGTGTTATCACTGTGAGATAAGAGCATATCTACATGTTATCGCACAGGCTTGTAATCCTCTCTTCCTCTTCTTCAGGAGTGTGGGAAGCAGCTGTCTGATGAGCCTGGATCTCAGTGCTTCCCTCTGGATTCCCACCTCCTCTGCCACTCTTGCCACATGACCAGGGTGTGCGTCACACATAACCTTCCCCCTCACGACACACACTGAAATGAGAACTAATGTGCCTGACCAACATAAACTACTTTGTACTCTCATATGCACACTAGTGACCACTGTAAATTGTTGCCTTTCTAATGTGTCTCTCTTCTATGCCAGCTCTATTTTTGAAGATAGCGAGAGGGGAGGAAACACTCTCCTACTGAGACTTGAGGTCATAGTACATTTCAAATGCAAATCCCAGGACTGGTAAACTATATCACCCCCTAGTGGCTGGGAAATGCAGCAACTGAATCCTGCTGAACAAAATATTTCTATACAAGTTCTCTGTTTAAGATTATTGTCACCTGCTTACTTCATTATTAGGGGGAGTTGAAATATCACAGAACACTGTTTTACTCCCATATCTACTGTTTGCTGTAGGGAAAGAACAAGGGATTTTTTTGCTTAACATTTTTCTATATTTAATATCACTAGCAAAAATTTTGCACTTAAACATGTTTACCTATTAAGAGATTTTTTTTTTTTTAATAAA

Function

symbol description
ajuba Predicted to enable transcription corepressor activity. Acts upstream of or within heart development. Predicted to be part of transcription regulator complex. Predicted to be active in P-body; adherens junction; and nucleus. Is expressed in head. Orthologous to human AJUBA (ajuba LIM protein).

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_00704809_00709524.mRNA True 2664 mRNA 0.52 8 704278 709524

Neighbor

gene id symbol gene type direction distance location
CI01000026_00660711_00663647 DHRS4 coding downstream 40351 660576 ~ 663927 (-)
CI01000026_00649560_00650856 CIDEB coding downstream 53422 648536 ~ 650856 (-)
CI01000026_00640645_00641903 NA coding downstream 62283 640259 ~ 641995 (-)
CI01000026_00610300_00621460 NA coding downstream 82818 610138 ~ 621460 (-)
CI01000026_00580718_00581534 NA coding downstream 121843 580711 ~ 582435 (-)
CI01000026_00720139_00726461 MMP14A, MMP14 coding upstream 9596 719120 ~ 726461 (-)
CI01000026_00750324_00762810 NA coding upstream 40630 749001 ~ 762810 (-)
CI01000026_00767991_00775879 GMPR2, GMPR2.S coding upstream 58467 767991 ~ 775879 (-)
CI01000026_00781130_00793571 SLC7A8A, MGC53111, SLC7A8, SLC7A8.L coding upstream 70375 779899 ~ 793571 (-)
CI01000026_00898521_00902621 NA coding upstream 188695 898219 ~ 902692 (-)
G127011 NA non-coding downstream 97782 606290 ~ 606496 (-)
G127010 NA non-coding downstream 98035 606042 ~ 606243 (-)
G127009 NA non-coding downstream 98511 605286 ~ 605767 (-)
CI01000026_00455420_00493117 NA non-coding downstream 195175 455249 ~ 509103 (-)
G126968 NA non-coding downstream 316176 383049 ~ 388102 (-)
G127090 NA non-coding upstream 12126 721650 ~ 721955 (-)
G127030 NA non-coding upstream 30228 739752 ~ 740794 (-)
G127095 NA non-coding upstream 37091 746615 ~ 746832 (-)
G127096 NA non-coding upstream 37420 746944 ~ 747297 (-)
CI01000026_00986386_01002180 NA other upstream 290323 986182 ~ 1002180 (-)
G127418 NA other upstream 1026253 1735777 ~ 1736220 (-)
CI01000026_03439507_03490314 PDE3B other upstream 2671261 3438795 ~ 3490503 (-)
G129476 NA other upstream 2961050 3670574 ~ 3670884 (-)
G129658 NA other upstream 3657772 4367296 ~ 4373069 (-)

Expression


Co-expression Network