CI01000026_00640645_00641903


Basic Information

Item Value
gene id CI01000026_00640645_00641903
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 640259 ~ 641995 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_00640645_00641903.mRNA
AGACTCATAGTGAAGACAGAGAGAGATCTTAGTACATCTGTAACAAAACGTTCTGAATATTTGAACTGAAAATTAGAAGATTAGCAGCAAGTATGGCAGCCAAGCCTGAAGTTCCCAAGAAACCCTTATTTGTGAGCTGTGATTTATGTGTGGAAGTGAAAACTCTGGCGCTGAAGACCTGCTTGAAGTGTGAAATCTCTATGTGTGCTCAGCACCTACAGACCCACCTGACCACTCCAGTGCTGCTACAAACCCATCCACTAACTAACCCTGTAAAATCAGGTTCGTCTAGTCAAATGGCCAGCAAATGCACAGCTCATGGCAAGCTAGTGGAATACTACTGCCTGGATGATCACGTATTGGTATGTATGTCTTGTGCCATCGAGGAGGGACATCGGCTGCATAACATGAAGACGCTACAGACCGCCTATCTGGAGCTGGTAGATCAACTGAAAGAAGAGTCAGAGGCACTGGCTCAGAGGCAGAACCAGGCAAAGGAGCTGGAAAGGTGGCATAAATACCAAATACAGACTCTGGAGGACTGTGTTAGACAGCTGATGGAGACTGGATTAGCCCTGAAGGATCTGGTCTTTACAAGTTTACAGACCTCGGTATCAGCCAGATTGGGAACTATTCAGACAGCCCAGCAAGCTATCAGTTCAGCTCTGAAAAAAGAGGATAATTTCAGCTTCTTGCAGAAATTTGCCAGTGTACAGAAAGCTATAATGGATGCTCGCATAGTGGATCTGAAACAGGGCTTGGAGTCAGGACCTGATCGCTCTAAATTAATTGAAAATATCATTAAGAATGGACAAATTATTAAGGAGCAGGAAGATAAACTCCAGGAAAAGTTTCTTGCTTTTGCTGACCCTGAATATTACCTTTTCACACAGAATGAAGCAAACATAACTTTATCCCTTTTTCACCTTGGAAAATATAACATCTACTCTACAAACCAGAAGAAACTCGAGACGAGAAAATGATCTATGCATTGCAACTGGCAATTCATATACAGAAATACTCTGTGTACTCAAACAATAATCAATCAGAGAAGTAAATTGCAAAAGCATCATTGTAATTTATTGTTTTTCTATTTTTGTTAATTGTTTTGTTTATATATTATGAATAATATGTTTAATACTTCATTTTATATTTGTTCTGCTGTCATGCAAAATAATTAGTCGTTTAAAGCTAAGGAAGCACTTATTTAATCTTATTTTAAAGTAAGTTTTCATGTACAATTTTAATTATATTTTTATGTAAATGCATACTAAATTTAGTTCTCTCTATTTTCTGTTAAAATAATGTACCCAAATGCTTAAGTGCTAAGTGAAAAGGGAGGAGATGAGTTTATTCCAACTGCAATAAA

Function

NR:

description
Tripartite motif-containing protein 25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_00640645_00641903.mRNA True 1369 mRNA 0.38 2 640259 641995

Neighbor

gene id symbol gene type direction distance location
CI01000026_00610300_00621460 NA coding downstream 18799 610138 ~ 621460 (-)
CI01000026_00580718_00581534 NA coding downstream 57824 580711 ~ 582435 (-)
CI01000026_00530210_00532716 VBP1, PFD3 coding downstream 107183 530105 ~ 533076 (-)
CI01000026_00516302_00519072 NA coding downstream 121187 516068 ~ 519072 (-)
CI01000026_00511242_00512961 NA coding downstream 126566 510948 ~ 513693 (-)
CI01000026_00649560_00650856 CIDEB coding upstream 6541 648536 ~ 650856 (-)
CI01000026_00660711_00663647 DHRS4 coding upstream 18581 660576 ~ 663927 (-)
CI01000026_00704809_00709524 AJUBA coding upstream 62283 704278 ~ 709524 (-)
CI01000026_00720139_00726461 MMP14A, MMP14 coding upstream 77125 719120 ~ 726461 (-)
CI01000026_00750324_00762810 NA coding upstream 108159 749001 ~ 762810 (-)
G127011 NA non-coding downstream 33763 606290 ~ 606496 (-)
G127010 NA non-coding downstream 34016 606042 ~ 606243 (-)
G127009 NA non-coding downstream 34492 605286 ~ 605767 (-)
CI01000026_00455420_00493117 NA non-coding downstream 131156 455249 ~ 509103 (-)
G126968 NA non-coding downstream 252157 383049 ~ 388102 (-)
G127090 NA non-coding upstream 79655 721650 ~ 721955 (-)
G127030 NA non-coding upstream 97757 739752 ~ 740794 (-)
G127095 NA non-coding upstream 104620 746615 ~ 746832 (-)
G127096 NA non-coding upstream 104949 746944 ~ 747297 (-)
CI01000026_00986386_01002180 NA other upstream 357852 986182 ~ 1002180 (-)
G127418 NA other upstream 1093782 1735777 ~ 1736220 (-)
CI01000026_03439507_03490314 PDE3B other upstream 2738790 3438795 ~ 3490503 (-)
G129476 NA other upstream 3028579 3670574 ~ 3670884 (-)
G129658 NA other upstream 3725301 4367296 ~ 4373069 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034704 si:dkey-183c6.9 coding NC_007118.7 CM002891.2 24002096 ~ 24005268 (-)