RNA id: unassigned_transcript_103


Basic Information

Item Value
RNA id unassigned_transcript_103
length 72
RNA type tRNA
GC content 0.59
exon number 1
gene id trnap-agg_1
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 35046649 ~ 35046720 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggctcgttggtctaggggtatgattctcgcttAGGGTGCGAGAGgtcccgggttcaaatcccggACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29553 lncRNA upstream 31788 35014627 ~ 35014861 (+) True G21728
TU29532 lncRNA upstream 75369 34971050 ~ 34971280 (+) True G21714
TU29528 lncRNA upstream 104465 34941572 ~ 34942184 (+) True G21711
TU29498 lncRNA upstream 227034 34819395 ~ 34819615 (+) True G21687
TU29492 lncRNA upstream 404030 34642414 ~ 34642619 (+) True G21681
TU29699 lncRNA downstream 196027 35242747 ~ 35279596 (+) False LOC120545939
XR_005636761.1 lncRNA downstream 196031 35242751 ~ 35279312 (+) True LOC120545939
TU29701 lncRNA downstream 208472 35255192 ~ 35256775 (+) True G21808
TU29715 lncRNA downstream 242578 35289298 ~ 35290766 (+) True G21822
TU29743 lncRNA downstream 321330 35368050 ~ 35414776 (+) True G21841
XM_039783502.1 mRNA upstream 33804 35005357 ~ 35012845 (+) False LOC120547795
XM_039783494.1 mRNA upstream 33804 35005358 ~ 35012845 (+) False LOC120547795
XM_039783486.1 mRNA upstream 33804 35005359 ~ 35012845 (+) True LOC120547795
XM_039783507.1 mRNA upstream 33804 35005359 ~ 35012845 (+) False LOC120547795
XM_039822433.1 mRNA upstream 47440 34977000 ~ 34999209 (+) True LOC120572910
XM_039782167.1 mRNA downstream 121359 35168079 ~ 35192486 (+) False picalmb
XM_039782172.1 mRNA downstream 121360 35168080 ~ 35192486 (+) False picalmb
XM_039782182.1 mRNA downstream 121360 35168080 ~ 35192486 (+) False picalmb
XM_039782189.1 mRNA downstream 121360 35168080 ~ 35192486 (+) False picalmb
XM_039782199.1 mRNA downstream 121360 35168080 ~ 35192486 (+) False picalmb
XR_005637456.1 other upstream 1944961 33041400 ~ 33101688 (+) False stx1a
TU28939 other upstream 2149086 32896624 ~ 32897563 (+) True G21267
unassigned_transcript_102 other upstream 2603596 32442967 ~ 32443053 (+) True trnastop-uca
TU28528 other upstream 3324163 31719505 ~ 31722486 (+) True G20956
TU28524 other upstream 3332770 31706623 ~ 31713879 (+) True G20954
TU30074 other downstream 1767128 36813848 ~ 36815638 (+) True G22099
TU30081 other downstream 1781190 36827910 ~ 36828411 (+) True G22106
TU30179 other downstream 2217331 37264051 ~ 37269296 (+) False dynll2a
TU30279 other downstream 2394152 37440872 ~ 37443828 (+) True G22263
TU30800 other downstream 4176006 39222726 ~ 39224106 (+) False brca2