RNA id: XM_039782172.1


Basic Information

Item Value
RNA id XM_039782172.1
length 4248
RNA type mRNA
GC content 0.48
exon number 23
gene id picalmb
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 35168079 ~ 35192486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTACGTGTACACCTGCATCACAGAGCATATCTAATAGGAGCTCAGCGGTGTAACATCTGATTCAGGCTCTGCAGGGGcggtgtttgttgtgtgtgtagcctTTTTCATAAGAGCAGGCCCGCCATTTCCCCTCCCTGGTGGTCTTTTTTCTTTCATAGCGTTTTAAAGCGGAgcgggaggggaggaggagaagaagcgGCGGCGACGACTGGCGGAGCGGcggaggcaggcaggcaggcaggcaggcaggaggagAGACGCAGGGATCCGGTGTGCCACATCGGGATGAGAGCGAGACACAGACCCGGGTCGGATGAGTCAGCGAGTGGACCCTGCAATCACGGCATCCCTGAAATCTGAGCGgcgcaacaaaaaaagaaacagtctaacattttttgattgttgttgttgttgtcagatTCCGCTTCTTTTTATTCCGCCCTCCCCTGGCCCGCGTCTGCCATAGCCTAgtttagatttatttattttttattatcattattattatcaccAAGGTGggaaaggggtgggggggggtccaGCAAGGTTGCGGAGGAGGTGgaggttttattttctttctttattcaaAGCTCACACCCGAAGATACACCCAGAATACCTTTGCAAAGTCTTTTGTTGCATTCAGTGTGTGAAGATGTCGGGGCAGAGCATTACGGACAGGATAACTGCAGCCCAGCACAGTGTAACGGGATCCGCCGTGTCGAAAACAGTATGCAAGGCCACCACTCACGAAGTAATGGGCCCgaaaaagaaacatttggacTATCTGATCCACTGCACCAACGAGATGAACGTGAACATTCCCCAGCTGGCTGACTCGCTGTTCGAGAGGACCACCAACACCAGCTGGGTGGTTGTGTTTAAGTCACTTATCACCACACACCACCTCATGGTCTACGGCAACGAGCGTTTTGTCCAGTACTTGGCTTCCAGGAATACACTTTTCAACCTCAGTAATTTTTTGGACAAAAGTGGGTTACAAGGTTATGACATGTCCACATTTATCAGGAGGTATAGTCGATACCTGAACGAGAAAGCCGTTTCGTACAGACAGGTCGCCTTTGACTTCACAAAAGTTAAACGCGGAGTGGACGGCGTGATGAGGACAATGAACACAGAGAAGCTGCTCAAGACTATCCCCATTATTCAGAACCAGATGGATGCCCTCCTCGATTTCAATGTCAATGCCAACGAGCTGACTAATGGAGTCATCAATGCAGCCTTCATGCTCCTCTTCAAAGACTCCATCAGGCTCTTCGCTGCTTATAACGAAGGCATTATCAACCTGCTTGAGAAATACTTTGACATGAAGAAGACTCAGTGTAAAGAAGGTTTGGACATTTACAAGAAGTTTCTCACCCGAATGACCCGGATATCAGAGTTCCTCAAAGTAGCAGAGCAGGTGGGCATCGATCGAGGAGACATCCCAGACCTTTCACAGTTCACAGTTTGTGCTCCCAGTAGCCTTCTCGAAGCTCTGGAGCAGCACTTGGCGTCTTTAGAGGGCAAGAAGGTCAAAGACTCCACTGCAGCCAGCAGggccagcactCTATCAAATGCAGTGTCATCACTGGCCAGCACGGGGATGTCTTTCACTAAAGTGGATGAGCGGGAGAAGCAGGCCGCTCTCGAAGAGGAACAGGCTCGACTCAAAGCTCTGAAGGAACAGAGGCTCAAAGAGCTTTCCAAGAGGCCCTCCTTTGCCACCACTGATACGTCACCGATCTCCACCACCGGGGGCACTATCAGCACAGCACCAGCCATCGACCTCTTCTCTACACCCAGCTGCTCTAATGGCGCAGTGAAGATGGAGAGTGACCTTTTTGATCTGCAGTCAGGGTTCCAGCCCTCAATGCAATCAGGCTCAACAGGGCTTCCAGTGGCAACAGCGTGGGCAGATCGTTACAATCCCTTTATTGACACAAACTCATCCGTTTCAACCAATTTCAAACGCACAGTGCGGATAGAACACTCCATCTCAGACTCCTTCTGTGGTCCAGTGTCCATTGCCCAGCACCTCCCACACCAGGCTACCTTCCCCACTGAGCCCTCTACTGTAGCAGGTCTATTCAGAGGATACTCGACGCCACAGGCTCCTCCACAACAGTCAGCAGGGGGACTCCAAGTGGACTTTGAGTCTGTTTTTGGAGCCAAGGCCGCAGGCAGCAACATCCTCAATTCTGATGATATTTCTGGGGGCATCCTGAAACCGACTCTCGCCGGCTCCAACCAGGCGTCCGGTCAGCTGCCAGATAAGCTGGTGTCAGATGACCTCGACTCCTCCCTGGCCAACCTTGTCGGCAaccTCGGCATCGGGAACggcatgatgaaaaaTGACATGCACTGGAGCCAGCCGGGGGAGAAGAGGATGACCGGCGGCACCAACTGGCAGCCCAAAGCAGCACCGAGCACGACCTGGAACCCCGTTTCCATGCCATCGTCAGTCATGGCCTTCCCTGCCACCACGCCCACAAGCATGATGGGATATGGCATGCCTCCACAAATGGGCTCTATGGGGATGATGAATCCACCCACCATGATGTACTCCCAGCCTGTGATGAGGCCACCCAACCCCTTTGGCTCTGTGTCGAGTGCTCAGGTGGGTGCACTGCCGTCCGACCACGCCACCGAGCGGATGCACAATGAACCCTCCGCAGCCTCTAGTCCTTCCAGCCAGAGTCCTCTCCGAGCCCCTGGACAGGACCCGTTTGCACACCTCTCTCTCAAGGATTTCTTGTAGAGCGTCTCTTTAGATGCAGTTCATGTAATTTGAAGAAATGTGTCTCTCGGAAGATGAAGCACTTAGCAGCAAAGCGTTGTCCTCCTCGTTGCAGTCTAACTCTTCAGagaaatattcacacacacacacacacacacacacacacacacacacacacacacatgtcaaGAACACAATGGTGCAACGACTGTCCAAAACCATGGCAACCATGTCCAAACAACGTTTGGCGATAGCTCACACCCATTATTCTATAACTTGTCCGAGACGTCGAGTGATGCTGCTGTCTAAACCCCCCCCTTAAAGAGGATTCCGTGTCCATTTTACAGTGTAATCTGTAAAGATAGATATGGGTGCTGAGAAACTTTGATGTTATGTATTTGGAAATACTGTGGTTGGATGTAAAGGTTTGATGTTCAGCGAAAAAGGAGAGCGGTCCTTCCCTTTCTTGATCCGATCATCAGTCATCCACTCCCTACAGTTATTTAACTGTCACTAAGTAgtgatgctaatggcgtttacacctgtttagtttttgtcttttttaccgTGTTTACAGTAGACATtccttgtgtgttgtttgtatttatttatgattattGGTTTAAGattggggggggaaaaaataatgtaaaatctACAGTACATTGAACACCTGTGGGAGTGCTTCAGCATTAAACAAGGATCTCAGACTATCATTGAGAGGTAGAGTTAAAAATAGCTATTCTATAAATTACACCTATTAAGCGGAATGATAGAGCACTAAATATTCTATGAGTTTTGTGTTAAGAAACTTTTTTACTAGATGAAAGATTTCACAATCTCCATTGTAATTAAAGTGCAGGGGTTAGAGTACGAGTCAGTTACCAGTATATAGTCGATTCTGTGCCTAGGGTTTTTTGCAATGGATCAGTTTCCTGTCTAGTTGAAAAACACTTAATCCATGAATCTGAAGCGCCGCACTGGGTGGTGGGCTCCATTTGCTTTAAGCTTGGCATGCCATTGACTCACTGACCGTATTCAAGGCTGCCTTTACTCTGAATGTGAAAGAGTTGTCTTCATGTTGCACACATCTTTCCCCACTGAAGTTCCTCAGTGGGAGTGGGTGGGTTGgttggtgggtgggtggggtcgAGAGCATGTGGGCGCGTCTGCTTGTTGGTTAGCTGTCGCCACGCTAACGGGAAAAGGGTCACAGATTCGATGTAAATTAATGTATAAAAAGATCCAGAGGACCAGGGTGGAGTGGAGGAGCACTGTTGATCGGCGCTctgtgtatataaaaaaaaactgactgtcCTTTGAGTTCAAAAGTGAAAGATGTATGAAATATGAAAGCAATTCAATCAAATTTGACTCTACCTAAGTTTGATTCAGGATATTCTCTGCGTTTGTCTCCGCAGATATTTTCTTTATGTAATTAGAACGTGTAGCAGACAATGACTGaagtcttttctttcttttacaaaTAAAGAGCAGCTTCCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29553 lncRNA upstream 153219 35014627 ~ 35014861 (+) True G21728
TU29532 lncRNA upstream 196800 34971050 ~ 34971280 (+) True G21714
TU29528 lncRNA upstream 225896 34941572 ~ 34942184 (+) True G21711
TU29498 lncRNA upstream 348465 34819395 ~ 34819615 (+) True G21687
TU29492 lncRNA upstream 525461 34642414 ~ 34642619 (+) True G21681
TU29699 lncRNA downstream 50261 35242747 ~ 35279596 (+) False LOC120545939
XR_005636761.1 lncRNA downstream 50265 35242751 ~ 35279312 (+) True LOC120545939
TU29701 lncRNA downstream 62706 35255192 ~ 35256775 (+) True G21808
TU29715 lncRNA downstream 96812 35289298 ~ 35290766 (+) True G21822
TU29743 lncRNA downstream 175564 35368050 ~ 35414776 (+) True G21841
XM_039783502.1 mRNA upstream 155235 35005357 ~ 35012845 (+) False LOC120547795
XM_039783494.1 mRNA upstream 155235 35005358 ~ 35012845 (+) False LOC120547795
XM_039783486.1 mRNA upstream 155235 35005359 ~ 35012845 (+) True LOC120547795
XM_039783507.1 mRNA upstream 155235 35005359 ~ 35012845 (+) False LOC120547795
XM_039822433.1 mRNA upstream 168871 34977000 ~ 34999209 (+) True LOC120572910
XM_039777826.1 mRNA downstream 2657 35195143 ~ 35221174 (+) True sytl2b
XM_039777834.1 mRNA downstream 2657 35195143 ~ 35221174 (+) False sytl2b
XM_039777842.1 mRNA downstream 2667 35195153 ~ 35221174 (+) False sytl2b
XM_039777866.1 mRNA downstream 43644 35236130 ~ 35242169 (+) True hspa8b
XM_039792069.1 mRNA downstream 162679 35355165 ~ 35412138 (+) True esamb
unassigned_transcript_103 other upstream 121360 35046649 ~ 35046720 (+) True trnap-agg_1
XR_005637456.1 other upstream 2066392 33041400 ~ 33101688 (+) False stx1a
TU28939 other upstream 2270517 32896624 ~ 32897563 (+) True G21267
unassigned_transcript_102 other upstream 2725027 32442967 ~ 32443053 (+) True trnastop-uca
TU28528 other upstream 3445594 31719505 ~ 31722486 (+) True G20956
TU30074 other downstream 1621362 36813848 ~ 36815638 (+) True G22099
TU30081 other downstream 1635424 36827910 ~ 36828411 (+) True G22106
TU30179 other downstream 2071565 37264051 ~ 37269296 (+) False dynll2a
TU30279 other downstream 2248386 37440872 ~ 37443828 (+) True G22263
TU30800 other downstream 4030240 39222726 ~ 39224106 (+) False brca2

Expression Profile