RNA id: XM_039792069.1


Basic Information

Item Value
RNA id XM_039792069.1
length 2089
RNA type mRNA
GC content 0.52
exon number 8
gene id esamb
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 35355165 ~ 35412138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTACACACTTTACTGGGGGAgaaggaggaaaaggagaggcGCGCGCTCAGGCAGCGCGAGTCAACCAGGTCGGTTTCAACACAGAAAGggggaaagaagaagaagaagaagaagaagaagaaggggaaaaaaaacctgaacGCTTTATGTTCTATCTTGATGTGGTCTGGAAAGTGAGGGGCGAGCGGAGCGGCCAGCCGGTTACGCTCTGCGATGACAGCGTGTGTTTGTTGGCGGGatgggaagaggagaggagagggagctTCACTTGCACACGTCGCCTCGCTGGTTCGTGCAGCGGTCGGACACTTAATTGCTACAGTTGAAGACAATTAAGCAGCATTATTGGAAGGCGAAGGCATAGTGTCTGGTGTTCAACTTTGAAAGAAAGCTCTCTGTGGTGCTGGAGCAGCCGGTGGATGTTGCGCCATGGAGATAAAGACGAGACTTCGTGCCATGCTGATGTTCTTATGGATTTTTCAAGGTGACACCAGGAAGTTGGAGATCCCCAGAGGAGAGATGGAGGCGGTCAGGGGCCAGATGGTGGTGTTACACGCCTGGTATAGCCCCAACTCAGACATTTCCAAAAACCCTGTCGTTTGGCACTTCACGGGTAAAGAAACCAAGCAGGTGATAAGCTTTAGCTCAGGCGAGGTCGGTTATGGCCAGAACGAGTTCACCAAAAGAGTGGGCTTCAGCGCGGCCATGCCCTCAGCCAACCTGTCCATCTACATCAACAACACCCAGGAGTCTGACTCTGGGGCCTACTTATGCACTGTCATCATCCCTGGAAGTCCTGTCCTTTTGGGTAACATACACCTTAATGTCAAAGTCCCTCCTTCTCCCCCAGTGTGCACAATGACAGGGAACCCAGTGGTGAAGGGCAACGTGACACTGAGCTGTAGGTCCAGTCATGGAAAGCCCGTCCCTCAGTACAAATGGACCAAGTCGGCACCTATGTCTGAGGTCTTCTTCTCACCAATGCAGAaatggAGAGCCTGCCCCCAGCCCATGCTTGTCCTTGGGTTCATGGATGAGAGGCACGGAACCCTCAGGCTGAGCAACCTCACTAAAAGCATGTCGGGGAAGTACATCTGCCGAGCCAGCAACACTGCCGGCTCAGACAGCTGCTCCATTAACCTGGAGGTTATCACCTCTTCCAATGCAGGCATGATCGCAGCAGCTACGCTGGGGTCAATAGTGGGACTGGTGGCCATGGTGCTCTTCCTCATATTCATACTGAGAAGGAGGAGGGACactgaggaggagatggccaACGAGATCAAggAGGATGCTCAGGCACCAAAGCGAGTGTCATGGGCAAAGAGTAACACCGGCTCAGACATTGTATCTAAGAACGGCACGCTGTCCTCCATAGCCACCAGTCCTCGACCCCGAGACCCGCCAAACTACCACTACCCGTACTCCCCAACATCAACTTCAGACGCTGGCTCGGTGATCAATGCCTACCAGCTGCGACCTGGAGAAGCCAGTACGCTACAGGGACTTCCCGGTTACAACATCGGTGGCACCCCGTCACGCAAACACAAGCGACCTCCCAGCACAAATGGGGGCCCTCCGCAGCTTCTAAGGGGCTCTGTGGTCGCAATGCCCAACAGGACTGAGGGGGCTCAGCCTCAGGTGCCGCCTCCACCCACTGTGTCCCCACAAATGAGCTCCTCCACTCTGACGCGCATGGGAGCTGTAGCTGTCATGGTGCCTGCTCAGAGCCAAGCCGGCTCCCTGGTGTAGGCCGGCAGAAGGACCGTGGTTACGGATGGAGAGAAAGTATGCCTTGCAATGGAAAGCACTTTCTCCACAAAGACCTGAAAGCTTGGTCTCCCTTCGGCTCGTTCATTtcagtttcttttttaaaaagatatttttatttacaCTCTTATAAAGAGATCTTCAAAATGGAATCCAATAGCGTTTGGATTTTTAGGCAGTATACAATGTAAGGGGGATTTCAAGAGTTGTTACCCTATTACAGTGTGTCTGGATACTGTAAACCATTAGAGCTTAGAGCTTTGCAGTTCTTGCAAAATATGTTTTGACTACATTTGTATTTataactaaaatatata

Function

GO: NA

KEGG:

id description
K06787 ESAM; endothelial cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29715 lncRNA upstream 64399 35289298 ~ 35290766 (+) True G21822
TU29699 lncRNA upstream 75569 35242747 ~ 35279596 (+) False LOC120545939
XR_005636761.1 lncRNA upstream 75853 35242751 ~ 35279312 (+) True LOC120545939
TU29701 lncRNA upstream 98390 35255192 ~ 35256775 (+) True G21808
TU29553 lncRNA upstream 340304 35014627 ~ 35014861 (+) True G21728
TU29760 lncRNA downstream 14869 35427007 ~ 35429461 (+) True G21857
TU29771 lncRNA downstream 120344 35532482 ~ 35535087 (+) False igsf9ba
TU29835 lncRNA downstream 534710 35946848 ~ 35948800 (+) True pih1d2
TU29858 lncRNA downstream 729278 36141416 ~ 36144692 (+) True G21924
TU29966 lncRNA downstream 889090 36301228 ~ 36302589 (+) True G22015
XM_039777866.1 mRNA upstream 112996 35236130 ~ 35242169 (+) True hspa8b
XM_039777826.1 mRNA upstream 133991 35195143 ~ 35221174 (+) True sytl2b
XM_039777834.1 mRNA upstream 133991 35195143 ~ 35221174 (+) False sytl2b
XM_039777842.1 mRNA upstream 133991 35195153 ~ 35221174 (+) False sytl2b
XM_039782150.1 mRNA upstream 162679 35168081 ~ 35192486 (+) False picalmb
XM_039787212.1 mRNA downstream 7996 35420134 ~ 35423144 (+) True thyn1
XM_039783015.1 mRNA downstream 44624 35456762 ~ 35530553 (+) False igsf9ba
XM_039783023.1 mRNA downstream 44625 35456763 ~ 35530944 (+) False igsf9ba
XM_039783001.1 mRNA downstream 44629 35456767 ~ 35534110 (+) True igsf9ba
XM_039783009.1 mRNA downstream 44631 35456769 ~ 35534110 (+) False igsf9ba
unassigned_transcript_103 other upstream 308445 35046649 ~ 35046720 (+) True trnap-agg_1
XR_005637456.1 other upstream 2253477 33041400 ~ 33101688 (+) False stx1a
TU28939 other upstream 2457602 32896624 ~ 32897563 (+) True G21267
unassigned_transcript_102 other upstream 2912112 32442967 ~ 32443053 (+) True trnastop-uca
TU28528 other upstream 3632679 31719505 ~ 31722486 (+) True G20956
TU30074 other downstream 1401710 36813848 ~ 36815638 (+) True G22099
TU30081 other downstream 1415772 36827910 ~ 36828411 (+) True G22106
TU30179 other downstream 1851913 37264051 ~ 37269296 (+) False dynll2a
TU30279 other downstream 2028734 37440872 ~ 37443828 (+) True G22263
TU30800 other downstream 3810588 39222726 ~ 39224106 (+) False brca2

Expression Profile