RNA id: XM_039819947.1


Basic Information

Item Value
RNA id XM_039819947.1
length 5125
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120571186
representative False

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 29857641 ~ 29887146 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCACGCTTTGTGTCCCCTAAGCTGAAGTAGGCCTaacagaataagaaaaaaaggCTGCGACCATAATAGGACATGGTCGCCTCGCCCTCACGGGACGCGGTGATGATGCACAAGAGTCACGGATTTCTGCACGTAGAAGCGGAGGGGCGTGGCCACGTCACGGCCTCGCAGCATGCCAGTTTTTCATAGGTTGATGGAGTAGacgaaaagaaataataaaaacatctgcgTGCGGCTACGTGCGCTTCTCCTCGCAAGCTCCCGTATGAGACGAATTCcaagagaaaaggagggaggCACCGGCTGAGAACTAAAACTGCTGCAGCTCACCGAGGGTCATCGTTTTTGGTCCGGGCCGGTACACACGACAGCTCATAGCGCCGGCGGGCGGGTTCtgcaaagcctttttttttcaccaccaCCTGAAgatctcctcctctctgcatcCTTCAgttggagaaaaaagaaaagaactttCATCCAGCTAGACGTCAGAAGATGGAAGGCCAGCAAAAGCAGGTGACAGGTTATCTCCTGTTCTCTCTCGGCACCGCCGTCATCGGCTCTCTGCAGTTTGGTTACAACACAGGAGTCATCAATGCTCCCGAACAGAAACTACGATCTTTCTTCAACAATACCTGGGTTGAGCGGTATGGCAAGCCCATCAGCCCGGGGGTGTGTACCATCGTCTGGAGCATCGCCGTCGCCATCTTCAGTGTCGGCGGCATGGTGGGCTCCTTCAGCGTAGGCGTCATGGCCAACCGATTTGGCAGGCGCCGCTCCATGTTCCTGGTGAACTCTCTGGCGGTGATCGGCGGCCTCCTCATGGGCTTCTCCACCATCTGCTCCTCCTATGAGATGGTGATCGCCGGTCGCCTGGTCATCGGCCTGTTCTGCGGCCTCTTTACCGGCCTGACTCCCATGTATGTGGGCGAGGTGTCGCCCACTCCCCTCCGAGGCGCCTTCGGCACTCTTCACCAGCTCGGTGTGGTGGTGGGCATCCTGATCGCTCAGATCTTTGGCCTGGAGGCTCTGCTGGGCTCAGCCAAGATGTGGCCCCTGCTGCTGGCCCTCACCGTGGCCCCTGCTGTGCTGCAGTGCATCCTGCTTCCCTTCTGTCCCGAGAGCCCTCGCTTCCTGCTCATCAACCTGAATAAGGAGGAGCAGGCACGCAAAGTACTGGTGCGTCTGCGTGGCAGTGAGGATGTGAGTAAGGACATGCAGGAGATGAAGGAGGAGAGCGCTAAGATGGCCATGGAGAAGAAGGTGACCATCCCCGAGCTTTTCCGCGTCGCGGCGTTTCGTCAGCCCCTCCTCATCGCCGTCATGCTGCAGCTCTCCCAGCAGCTGTCGGGGATCAACGCTgtgTTCTACTACTCGACAGGCATCTTTGACTCAGCCGGTGTGAAACAGCCCATCTACGCCACCATCGGAGCCGGCATCGTCAACGTCATCTTCACCATTGTTTCTCTCTTCCTGGTAGAGAAGGCGGGACGGAGGACTCTGCACCTCCTGGGATTGGGTGGAATGGCGATCAGCGCCGTGCTCATGACCATCTCCCTCCTGCTGAAGGACATTCCCGTTATGAGCTACATGGCCATCGTCGCCGTCATGCTGTTTGTGGCCATGTTTGAGCTGGGCCCCGGTCCAATCCCATGGTTCATTGTGGCCGAGCTGTTCTCCCAGGGGCCCCGCCCGGCCGCCATGGCTGTGGCCGGCTGCTGCAACTGGACGGCCAACTTCCTGGTTGGAATGAGCTTCCCCAAACTAGTGGAGTGGTGCGGGCCTTGGGTCTTCCTCATCTTCACCGCCTtcctcatcttctttttcatctTCACCTTCATCAAAGTCCCAGAGACGAGGGGCAAGACCTTCGACGAGATCGCCCGCGGCTTCGGCGGCGCCCTGCCTACGACCTCCTCGTCTGTGGAGGACCCTCCCGCCAGCGTCAGCACCGCCACCACACTCCCCGCCTCGCCGGCGAAGGAGAAGGTCCCGCTGGTGGCGGCGCCGGCAGCAGCTCCGCCTCCTGCAGCTGAAAACACGCCCCTGGAAGAGAAAACCCAATCGACAGCGCAGCAGAGTTTGTAGAGCCGCTGTAGATAAGAGTTTAATGGCTGAAGGGGGGTTATAAATGAAGGAAGAATCACAGAGATTACAAAGATTAGCTGTAAATTGTAGTCAATTATCACACCTTGGAACTATAGAAGCGATATAATTTTTATAACAGACCTACCGAGAACAACAGCATAATCAACTTGTAGGCTTTGGCCCTTTAAAAGGTCATGCTTTCTGCTTTCACGGTAACTCCTTCAACTTCttatttttctgtgacatttccTCCGCTTCCTTCTATTTAAATCCTCCCTTCCTTAACTTTGAAAGGGAAGCAGTCACTGTACAATACTACAGATAATATCTACTGTACATTCCTAGGAATTAAGCTACATTCATTGAAAGGGTGAGTCGTTTTCAAGACAGCTCTGTGTCTAGTCTGGACGACACGGCAAACGCAGCTCGTGTTGATGGAAATAGTTCCTAACAGGAGTCCAGGTAGACTAGAGGCAGACTGTGTTGACAATGGCGCAGCCTTTTGTGCAAGTCCATTCACTTCTGAGTTCAGGTCCATGAAGTGTGAGTTAGACATGGATAGCAATGACACACCTTTTCTTTctcattcttttttcttttttttttaaagtttagacAGGTGTTACAGTGGGTATGTTAGTGCAATATAACTTTGTAGTTTCATTCTGTACATTTTTTTGATTAGGTGTTTAATCTGTTAGATCTTGTTGATGTTTCCGGAAGTGTTCTCAAGTCACGGGtctatgttcacacttggcgtcttttttgAAGCTGCCAGCGTCTGTTTTACGTTTATAATCCTATTGAATAAGCCGTGTTTTCAAAAAAGTACGGagggcttcttcttcttttttctgcaGCTCATGGTGTCTTTTTGAAGAttaaaaaagttcaacttttctgaagaaaaaaaaacaccctacgtatgcgctgtcgatatcttctataacagacgcgatggtggaatctacacatctcaattctccagcagcagccatctttgttgtcaacaaattcaacccaagcccTCTTTGGTGATGTGGTTgattatgtcactgtttatcatttgtccatcatcgtataaagcccgccctgacaatttgattggtccgaacagctctggttcgagaatagttgctccacaatggatcaagtccagaccgaacttcccgacctcaaatgttgtgggcggggctaagttcggctggcatccaggctaattAGCACTGCTCCTCATAGCGCTCTAGGATACTGTAacagtagctgttgttatagcatCAAAAGACGCTCTCGGCTGCTTTTTGGAATCAAAACGCTGCccgcttcttctttttttaactacaaAAGCGCCCTAGTCAACCTTTTCTTGTTaaaaaagacgccaagtgtgaacaAAGCCTAAGAAGGGTGATGGTCTGCCTTCAGCTGTTGACTACGAGCTCACAGACTGGAGAGCTTTTTTAGCAAATGCCAAAGTAGCCTACTGAACTTTAATTGCCACCTGGTCAGCACATGTAACCTCAAACGTGTTTTCTTCTGGTTGTTAAAgtcagggtgggaaattagcaGGAGCCACAGGTCTCAAGTTCGTTCATTCCGAAAGCTAAATTGGTGGTCAAAGCTGTGATCCCCCAGTTTATTTAACTTCCTTTAGTTTAGGCGACTCTTGCTCTCATTTAGAGGTCATGTCCTGCTCGTTCTTCAATTTTCGGTAAATGAAGTTGGTGCTCAGTTCTACATTTACGTTAACAAAATTGACATTTTACCAGAGAATTCTGTTGAAAAACAACTTGTCATTGGCTCAATTTCTATTCTGATTTATGAATAGGAAAAAAATATAGTGTGAAAAGATGTTCATTTGTTGTTAAATCATATGTATTAGTGCTTTACTGTATTTGGAAAATGATTACAATCTGGTAAAATCATGACCGTTGCTAATGACTGTGACCTGTGGACAATAACATGttggctgaattgttttacaCGTGTAGATTACAGTAGGGTAACGTGcaatgtatattttattttgtcaagaAAAGAATTAGTATTTATTACCTTAGAAATAGATttttatataaagtatatagtTATAATACACTAAAGCAAATTTAGAAACGTAATGCTTTCCTCCAGACTAGTCCGGAGTAAATGACAGCTGAATGAGTCTGTAGTGATCTTTACCTGCTGTGGTAGAGTGCATCACTGTAAATCTCATTTGTTACTCTCTATTTAGACTCACTTTATCAACCTGATAAGCAGCGAAGTGAGCATTAGCACCACAATCACTAATGTGGAAGTCATTGAGCCTAACAGCGCTTTATGTCAAAATAACAGAATAATAGTTTTCAACTATATTTACCTGAGCGACTGCATTTATCTGGCCAAGCTGTTATTAGAATAGATAGGAGTCATAATAAAATGTGCAATCTGCAACCTAATGTCTGAGCTGATAATGAGACAGGAAACTATAGAGCAAGTGCTATTAATGTAAAAGGACTGGTAAACAACACTTTAGTGGAAGAGTTCCTGTTGTTTGATTAGAACGACTAATCTggtttattcattattttttctctGTAATTTCTCATTTTCACAAAGGGGATAATGAGGACTATGACTACCTTATTGTGTTGACCTCTATGACAATCCAAGAAAATACTTTGTTCAATCAAAACAAAGAGTGTCATTCCAAAATGAGATATCCACCATCTTGAAAACCAGACTCCTTTTATTATATGAATGGCAGCACGCCATTGGGTTATGGTAGTTTCATAAGATTCTTAAGATCTATTGGGGCATTTAAAGcaccttcatttttttttaaagtaatttaaaagGCCAAAATTATGAGAGAGACACTGATATAATGACGTTTGGCGTTCTTGCTGCCAACTGAACGCTAAGTTATGTAAGTTAGCCGATTTATAGACCTATACGTGTGTAGGCTGCAGGTGATTTGAGGGGGGATGCCAAATGACCATAGTGCATCCCCTTTGTTAACCTGCCAACCCCCCTCTCCATGTCCTAGTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185117 lncRNA upstream 19599 29834548 ~ 29838044 (+) False LOC120571184
TU185100 lncRNA upstream 61151 29795932 ~ 29796492 (+) True G137485
XR_005641340.1 lncRNA upstream 515313 29340018 ~ 29342330 (+) True LOC120572018
TU185042 lncRNA upstream 519014 29334778 ~ 29338629 (+) True LOC120572017
XR_005641144.1 lncRNA downstream 31761 29913995 ~ 29928513 (+) True LOC120570849
TU185150 lncRNA downstream 34483 29916717 ~ 29916921 (+) True G137526
TU185154 lncRNA downstream 39334 29921568 ~ 29922337 (+) True G137527
TU185151 lncRNA downstream 39423 29921657 ~ 29922337 (+) False G137527
XR_005641146.1 lncRNA downstream 112954 29995188 ~ 30039612 (+) True LOC120570850
XM_039819945.1 mRNA upstream 2173 29849803 ~ 29855470 (+) True LOC120571185
XM_039819941.1 mRNA upstream 9718 29833443 ~ 29847925 (+) True LOC120571184
XM_039819431.1 mRNA downstream 6639 29888873 ~ 29912482 (+) True LOC120570845
XM_039819432.1 mRNA downstream 6639 29888873 ~ 29912482 (+) False LOC120570845
XM_039819434.1 mRNA downstream 6640 29888874 ~ 29912482 (+) False LOC120570845
XM_039819433.1 mRNA downstream 6640 29888874 ~ 29912482 (+) False LOC120570845
XM_039819435.1 mRNA downstream 6641 29888875 ~ 29912482 (+) False LOC120570845
TU185133 other upstream 2177 29849867 ~ 29855466 (+) False LOC120571185
TU185114 other upstream 9433 29839624 ~ 29848210 (+) False LOC120571184
XR_005641221.1 other upstream 796430 29020235 ~ 29061213 (+) False LOC120571364
TU184752 other upstream 990967 28864142 ~ 28866676 (+) True G137239
TU184767 other upstream 1009504 28847232 ~ 28848139 (+) False LOC120570924
TU185192 other downstream 269385 30151619 ~ 30155115 (+) True G137551
unassigned_transcript_626 other downstream 634324 30516558 ~ 30517890 (+) True LOC120570927
TU185363 other downstream 634349 30516583 ~ 30517816 (+) False LOC120570927
TU185466 other downstream 863551 30745785 ~ 30747008 (+) False G137743
TU185469 other downstream 863551 30745785 ~ 30747008 (+) False G137743

Expression Profile