RNA id: TU185150


Basic Information

Item Value
RNA id TU185150
length 205
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G137526
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 29916717 ~ 29916921 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcagagtatgagggcgtgccatgctagcagctaggtgagcattataacgtgtgttacaaagtgacgcacgttcatcacagaagtaaaggctggactacaatagagctgtttggagcagtttgtgaacagtgttttctgttggagatggtaagtccctttggggtggactttgggctttttcactttgtaaacctataacatgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185138 lncRNA upstream 29571 29881324 ~ 29887146 (+) True LOC120571186
TU185117 lncRNA upstream 78673 29834548 ~ 29838044 (+) False LOC120571184
TU185100 lncRNA upstream 120225 29795932 ~ 29796492 (+) True G137485
XR_005641340.1 lncRNA upstream 574387 29340018 ~ 29342330 (+) True LOC120572018
XR_005641339.1 lncRNA upstream 578095 29334788 ~ 29338622 (+) False LOC120572017
TU185154 lncRNA downstream 4647 29921568 ~ 29922337 (+) True G137527
TU185151 lncRNA downstream 4736 29921657 ~ 29922337 (+) False G137527
XR_005641146.1 lncRNA downstream 78267 29995188 ~ 30039612 (+) True LOC120570850
XR_005641145.1 lncRNA downstream 78267 29995188 ~ 30039612 (+) False LOC120570850
TU185186 lncRNA downstream 216034 30132955 ~ 30190325 (+) True G137547
XM_039819431.1 mRNA upstream 4235 29888873 ~ 29912482 (+) True LOC120570845
XM_039819430.1 mRNA downstream 16494 29933415 ~ 29982780 (+) True LOC120570844
XM_039820998.1 mRNA downstream 150274 30067195 ~ 30069038 (+) True LOC120571887
XM_039821001.1 mRNA downstream 150274 30067195 ~ 30069038 (+) False LOC120571887
XM_039821002.1 mRNA downstream 160654 30077575 ~ 30089918 (+) True LOC120571888
XM_039819527.1 mRNA downstream 174853 30091774 ~ 30111680 (+) False iffo1a
TU185133 other upstream 61251 29849867 ~ 29855466 (+) False LOC120571185
TU185114 other upstream 68507 29839624 ~ 29848210 (+) False LOC120571184
XR_005641221.1 other upstream 855504 29020235 ~ 29061213 (+) False LOC120571364
TU184752 other upstream 1050041 28864142 ~ 28866676 (+) True G137239
TU184767 other upstream 1068578 28847232 ~ 28848139 (+) False LOC120570924
TU185192 other downstream 234698 30151619 ~ 30155115 (+) True G137551
unassigned_transcript_626 other downstream 599637 30516558 ~ 30517890 (+) True LOC120570927
TU185363 other downstream 599662 30516583 ~ 30517816 (+) False LOC120570927
TU185466 other downstream 828864 30745785 ~ 30747008 (+) False G137743
TU185469 other downstream 828864 30745785 ~ 30747008 (+) False G137743

Expression Profile