RNA id: TU185133



Basic Information


Item Value
RNA id TU185133
length 448
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC120571185
representative False

Chromosome Information


Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 29849803 ~ 29855470 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACGAGTGAGTAGCCCTTCAGACCAAAGGACACTGGGCGTTAAGATCATTGCGGAATTTCTCTGTGAAAGAAGTCCAGCAGCTTGAAGATGTCTGACCAGATCGATGAGAAGATCAAGAACTACAGGACGGCTCCGTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTACCTGGATTTCCACAGATGTAACAAAGCTCTGTCGGCCAAAGACCAGGACACGGCTCCCTGTGATTGGTACCAGAGGGTCTACAAGAGCCTCTGCCCCATGAGCTGGGTTCAGAAATGGGACGAGCAGTTGGAGGCGGGAACTTTTCCCGGAAAGATCTGAACGGCCACATTCCTCCTGTATTTATCTCGGTATCCTAATGTGAAACATCTGCTCTTTATGTACAGAAGCAACTAAATAAATTATTCAACGTTACTGTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185117 lncRNA upstream 11823 29834548 ~ 29838044 (+) False LOC120571184
TU185100 lncRNA upstream 53375 29795932 ~ 29796492 (+) True G137485
XR_005641340.1 lncRNA upstream 507537 29340018 ~ 29342330 (+) True LOC120572018
TU185042 lncRNA upstream 511238 29334778 ~ 29338629 (+) True LOC120572017
TU185138 lncRNA downstream 25858 29881324 ~ 29887146 (+) True LOC120571186
XR_005641144.1 lncRNA downstream 58529 29913995 ~ 29928513 (+) True LOC120570849
TU185150 lncRNA downstream 61251 29916717 ~ 29916921 (+) True G137526
TU185154 lncRNA downstream 66102 29921568 ~ 29922337 (+) True G137527
TU185151 lncRNA downstream 66191 29921657 ~ 29922337 (+) False G137527
XM_039819941.1 mRNA upstream 1942 29833443 ~ 29847925 (+) True LOC120571184
XM_039819944.1 mRNA upstream 1942 29833450 ~ 29847925 (+) False LOC120571184
XM_039819942.1 mRNA upstream 1942 29834525 ~ 29847925 (+) False LOC120571184
XM_039819943.1 mRNA upstream 1942 29836225 ~ 29847925 (+) False LOC120571184
XM_039819940.1 mRNA upstream 17506 29818666 ~ 29832361 (+) True LOC120571183
XM_039819946.1 mRNA downstream 2175 29857641 ~ 29882234 (+) False LOC120571186
XM_039819947.1 mRNA downstream 2177 29857643 ~ 29882234 (+) False LOC120571186
XM_039819431.1 mRNA downstream 33407 29888873 ~ 29912482 (+) True LOC120570845
XM_039819432.1 mRNA downstream 33407 29888873 ~ 29912482 (+) False LOC120570845
XM_039819434.1 mRNA downstream 33408 29888874 ~ 29912482 (+) False LOC120570845
TU185114 other upstream 1657 29839624 ~ 29848210 (+) False LOC120571184
XR_005641221.1 other upstream 788654 29020235 ~ 29061213 (+) False LOC120571364
TU184752 other upstream 983191 28864142 ~ 28866676 (+) True G137239
TU184767 other upstream 1001728 28847232 ~ 28848139 (+) False LOC120570924
TU184788 other upstream 1063050 28775270 ~ 28786817 (+) False LOC120571342
TU185192 other downstream 296153 30151619 ~ 30155115 (+) True G137551
unassigned_transcript_626 other downstream 661092 30516558 ~ 30517890 (+) True LOC120570927
TU185363 other downstream 661117 30516583 ~ 30517816 (+) False LOC120570927
TU185466 other downstream 890319 30745785 ~ 30747008 (+) False G137743
TU185469 other downstream 890319 30745785 ~ 30747008 (+) False G137743

Expression Profile