RNA id: unassigned_transcript_626


Basic Information

Item Value
RNA id unassigned_transcript_626
length 566
RNA type C_gene_segment
GC content 0.52
exon number 2
gene id LOC120570927
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 30516558 ~ 30517890 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcaatgactttgtatcactgtggaACACGTTCggtggaggaaccagactgaATGTTGGAAGTGATGTCCGTCCCACCCTGACGGTGCTGCCCCCCTCCAGTGAGGAGTTGCTGAAGGGGGAGGCCACGCTCATGTGTCTGGCCAACAAGGGCTTCCCCTCAGACTGGAGTCTGGCCTGGAAGATGGACggcagcagcatcagcagcagctgggaggagagcaggagcCCGGGGGTGCTGGAGAATGATGGCCACTACAGCTGGACCAGCACCCTGAGGCTCCCTGCAGACCAATGGAGGAAGGTGGGCTCTGTGACCTGTGAGGCCACCCAGGGCTCCCAGATTCCGctctcagagacactgaggagagaCCAGTGTTCCTAGTCCTGACCTGACTCACTGGAACTCTGCTACTGGTTTCACTCTGAAAGTCTCAGTCTGTGCTCTGCAATTATCtctgtttttaattaatttgataTCTTTCAATAGCGATATTTACCAGCTTGTTGCAATATTTCTATATTATTTCAGTGTttaaagacaataaagatgtgttcatcaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641326.1 lncRNA upstream 56405 30459756 ~ 30460153 (+) True LOC120571960
TU185321 lncRNA upstream 97840 30400946 ~ 30418718 (+) True G137646
TU185322 lncRNA upstream 97840 30414921 ~ 30418718 (+) False G137646
TU185328 lncRNA upstream 131673 30384369 ~ 30384885 (+) True G137652
XR_005641297.1 lncRNA upstream 174053 30337177 ~ 30342505 (+) True LOC120571778
XR_005641309.1 lncRNA downstream 33016 30550906 ~ 30553703 (+) True LOC120571837
XR_005641308.1 lncRNA downstream 33017 30550907 ~ 30553703 (+) False LOC120571837
TU185410 lncRNA downstream 68968 30586858 ~ 30658439 (+) False rnf139
TU185404 lncRNA downstream 69352 30587242 ~ 30589910 (+) False rnf139
TU185405 lncRNA downstream 69352 30587242 ~ 30589910 (+) False rnf139
XM_039819450.1 mRNA upstream 249864 30244131 ~ 30266694 (+) True LOC120570853
XM_039819528.1 mRNA upstream 373012 30133220 ~ 30143546 (+) True LOC120570896
XM_039819526.1 mRNA upstream 386614 30091779 ~ 30129944 (+) False iffo1a
XM_039819523.1 mRNA upstream 386614 30091781 ~ 30129944 (+) True iffo1a
XM_039819525.1 mRNA upstream 386614 30091781 ~ 30129944 (+) False iffo1a
XM_039819221.1 mRNA downstream 18462 30536352 ~ 30548827 (+) False LOC120570731
XM_039819220.1 mRNA downstream 18468 30536358 ~ 30548827 (+) True LOC120570731
XM_039820929.1 mRNA downstream 37402 30555292 ~ 30569525 (+) True tatdn1
XM_039820702.1 mRNA downstream 53573 30571463 ~ 30587936 (+) True rnf139
XM_039820007.1 mRNA downstream 73583 30591473 ~ 30635973 (+) True tmem65
TU185192 other upstream 361443 30151619 ~ 30155115 (+) True G137551
TU185133 other upstream 661092 29849867 ~ 29855466 (+) False LOC120571185
TU185114 other upstream 668348 29839624 ~ 29848210 (+) False LOC120571184
XR_005641221.1 other upstream 1455345 29020235 ~ 29061213 (+) False LOC120571364
TU184752 other upstream 1649882 28864142 ~ 28866676 (+) True G137239
TU185466 other downstream 227895 30745785 ~ 30747008 (+) False G137743
TU185469 other downstream 227895 30745785 ~ 30747008 (+) False G137743
TU185519 other downstream 403276 30921166 ~ 30936857 (+) True G137773
TU185622 other downstream 1099705 31617595 ~ 31683452 (+) False LOC120570800
TU185625 other downstream 1099705 31617595 ~ 31683452 (+) False LOC120570800

Expression Profile