RNA id: XM_039819220.1


Basic Information

Item Value
RNA id XM_039819220.1
length 2577
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC120570731
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 30536352 ~ 30548827 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaacacacacacacacactcacatacacacaaacaaacatgctcCTGGATGTCCCGATGCTTTTCCATTGAGGCGATTAAGCGCTGTGATGATGGAACATCCGGGCGACAGctttgtttcCAACCAAATGGTAGATCCAACCAGAAGGTCTGAAACTTTCCTGGCTGGGACCTTGGCAAGGATGGGCTGGTTGTAAAAGTCCagcaagtttatttttttcagaactTCAGAAGTTTTCTAGGTTAAACGTTCACAAGAACTTCAGTGATCTCTTCCACTTTCAATCCAATAAATGGTCACCAGCCCTCCTGCCCTTGGACCAGGGTGATCAACTTTACAGAAACCTGGCCGGGATGTTGCAGAGTTTGAGAACAGTCCAGTCGGTCCATGAACTTTATCCCGACTTTGTTTTTGGCAGTTCTTTCCAAACCTGAATCAAAGCCTACAACTCAAGTCTAACTTTGGGCGGAGTCTGGACCTCATCTTTCTGCTATGACGTGTGACCCTGATGTTGATCCGCTAATTGAAAGTGAGCCTAATGGCGACTTCACTTGAAGTTGCCATGGACAAAAGTCAACAATAACCAGGGAGGGTGAGTTACTGAATGTTCATGATGAAGTGGCGATTCATTTTACTAACTTTTGTCTTTCTGACTCGCCGGTTACACCAGCCTGTCACCGGTGACTTTGCGCCCTCTGATGAACGTCCAGACGTTGGACACGATGAGGATGTACACCCCAACACCCTCACAGAAACAAACGGAGATGTACTGGACATGAACATCCAAACAAGCAGGGATGTACCGAACACAAACTTTGAAACAAACTGGGATATAAACAAGGACAACTTTGAGGACGCAGACTGGcatcctccttcctccctcctggAAACACACTCCGACCTGTCCCCAGAGATTGGTCCTTTGTCAGCGCAGTGCGGTGAGTACAGCAGCCATCTGACGTCAAGCGGCCATTGCCGACTGATGGCAACGCTCCCTCCGGTGCCAGTGGGAACCTCGCAGAAACGCTGCCCGGATATGTTCCGCTGCACAGACGACATCTCAAATTGGCTCCACGAGAACCAGAACAGAAAAGAGCAGCTGGACGACTTGACGGAAACAATGtcagagctgcaggaagagCTGAGGAACCACGGCCATCGAATCGCAACCCTGGAGGAGCAGGGTGTAGAAAGTGTTGGTTTAAACTTGACCTTTGACCAGCGGTTGAGGTGTCTGGAGTTGCAGCACGCCGAGGTCGACACGCTTTTCCACGTGCATGCGACGCTGCTGTACGAGCTGCAGGCGCAGCTGCGCAACCTGTCAGCAGCCGTGCAGCGCATGAGCCGCAAAACAGGCTGCAAGATCAACGACGTCAGAACTCCACCGCTGCTCGGCATGCGAGACACACCAGAGAGACAGCACCTGTCTTTCTGTTCATCCGACTGTGCGTCTCTGTATCACAATGGTGTTCGTCATTCTGGGGTTTACAACATCATCCTGTCGCCAGGCACCGTCCTGCCAGTCTACTGCGACATGGAGACGGaggGCGGGGGCTGGACGGTGTTTCAGCGGCGGCGGGACGGCTTGGTGAGTTTTAACCGCGGCTGGTCGGAGTATCGCGACGGCTTTGGCGAGCCACGGGGGGAACACTGGCTGGGCAACCAACAGCTCCACCTGCTGTCCAACCAGGGCCACTACAGCCTCCGCATTGAGCTGCAGGACTGGAGCCACGTCCAAAGACACGCCCTGTACCACAGCTTCAGGATAGAGAATGAGGAGAACCATTACCGCCTCCATGTGTCTGGTTTCAGCGGAACGGTGGAGGATTCGTTCGGTTGGTACCACGACCAGCAGGGCTTCAGCACGCCAGACACGGGCAACATCTGTGCCGAGATCAGCCACGCCGGCTGGTGGTTCCACCAGTGTTTCTACGCCAACCTCAACGGCGTCTACTACAGGGGTGGGCGCTACTCTCTGAAAGCTCAGAACTTGCTCGGGCCGGACGGCATCGTCTGGTTCTCCTGGAAGGACTCAGACTTCTACTCTCTGAAGGCGGTCACAATGATGATACGACCACGCAACTTCAGGCCACGCTTGTCGCCATAGAGACGTACCAGTCTGAAGCCCGACTAGCAGCTTCTTAGGACTGCTAGCTGCCTCGAGGGGCCGCCAGAAATGCTCACAAAAGCGCCAAATATATATTAATCCGCTGCTGAAAATAGTCTCCAACAAATGCACTTTTCTGCATGTTTGAGTAACTTTTGCTAAAAACAAGTTATCATCTGTTTTAAGAAATCTCTGAGCcataaaggacaattctggtaCAAAATgaccctaggggttaataacaagtgtaccgagtcgactgttctctgggatatgttttcatgctaatcgaatgtgaccagttttagcacaaaccgctaattagcttataaagctagtcgtcGAGGCACGGGTAAACCAACAGGACCAGTCGAATGACAAActccgtgcaaccagtaaccagtaacatggCTCAAGCatggcgttcgtcgttcgactggtcatgccaagatggcgcctgcatgTATACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641326.1 lncRNA upstream 76205 30459756 ~ 30460153 (+) True LOC120571960
TU185321 lncRNA upstream 117640 30400946 ~ 30418718 (+) True G137646
TU185322 lncRNA upstream 117640 30414921 ~ 30418718 (+) False G137646
TU185328 lncRNA upstream 151473 30384369 ~ 30384885 (+) True G137652
XR_005641297.1 lncRNA upstream 193853 30337177 ~ 30342505 (+) True LOC120571778
XR_005641309.1 lncRNA downstream 2079 30550906 ~ 30553703 (+) True LOC120571837
XR_005641308.1 lncRNA downstream 2080 30550907 ~ 30553703 (+) False LOC120571837
TU185410 lncRNA downstream 38031 30586858 ~ 30658439 (+) False rnf139
TU185404 lncRNA downstream 38415 30587242 ~ 30589910 (+) False rnf139
TU185405 lncRNA downstream 38415 30587242 ~ 30589910 (+) False rnf139
XM_039819450.1 mRNA upstream 269664 30244131 ~ 30266694 (+) True LOC120570853
XM_039819528.1 mRNA upstream 392812 30133220 ~ 30143546 (+) True LOC120570896
XM_039819526.1 mRNA upstream 406414 30091779 ~ 30129944 (+) False iffo1a
XM_039820929.1 mRNA downstream 6465 30555292 ~ 30569525 (+) True tatdn1
XM_039820702.1 mRNA downstream 22636 30571463 ~ 30587936 (+) True rnf139
XM_039820007.1 mRNA downstream 42646 30591473 ~ 30635973 (+) True tmem65
XM_039820533.1 mRNA downstream 554989 31103816 ~ 31110425 (+) True LOC120571534
XM_039820534.1 mRNA downstream 570962 31119789 ~ 31166090 (+) True si:ch211-264f5.6
unassigned_transcript_626 other upstream 18468 30516558 ~ 30517890 (+) True LOC120570927
TU185363 other upstream 18542 30516583 ~ 30517816 (+) False LOC120570927
TU185192 other upstream 381243 30151619 ~ 30155115 (+) True G137551
TU185133 other upstream 680892 29849867 ~ 29855466 (+) False LOC120571185
TU185114 other upstream 688148 29839624 ~ 29848210 (+) False LOC120571184
TU185466 other downstream 196958 30745785 ~ 30747008 (+) False G137743
TU185469 other downstream 196958 30745785 ~ 30747008 (+) False G137743
TU185519 other downstream 372339 30921166 ~ 30936857 (+) True G137773
TU185622 other downstream 1068768 31617595 ~ 31683452 (+) False LOC120570800
TU185625 other downstream 1068768 31617595 ~ 31683452 (+) False LOC120570800

Expression Profile