RNA id: XM_039820533.1


Basic Information

Item Value
RNA id XM_039820533.1
length 3981
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120571534
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 31103816 ~ 31110425 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGAAGTTATCCTGCGCATGCGTgttaagcatgtgtgtgtgttctgagcaAAGAGTCCGGTTAAACTGTTTTTACCCGTAATTCCGTCATGCAGTCCATCAGATACAACTGGAATGAATCCCCAGAGCCCGTATGTATGGATAGCCTTGTTCAAGTGGACTTTGTGCAGAGTTTCTGGACGCTTCACCTCGGATTCATCTCTGTTCGCTCAAAATGCTAAATGAAGTTAGCATAGCGTGCTAGCTGTAAATAGACGGAGACGGAACTCGGCCACCCAGCGCTAGTCTGAGCGACCAAACGGTGTTTTTCATGGACCCGCAGTGTCCAGATAAACATGTTTGAAGGGACTCTGTGCtgttccctttatttgaaaACGTCTCCTGGTGTCATACTAGCTAAGCTaatgaagttagctcgttagctGGAAGTAGACGGACCCGAACGTAACCTAGCAACACAGCGCATGTGTCAGAGGGAGAAAAAGTTGCTGTGATTTACTAAAAATGTCTCAAGTTGAAATGCTGAGAGCGTTTGTGAAGcagcgactaactgcggctgctgaagagatattCGAGCAGTTTGAAAgaacgatagcagagtacgaggaggaacttAAGTCCAGTTCGAAAGAGATTGACCGACAACAGAAACTACTGGACGCTGTTCGCAACCCTGAAGTCGGGTTACACAGAGCAGACGTCCCgcagctgttggtggttaaagaTTCGTgtccccctgagcagcaggagtggagCTCCAGACCGGACCAGGAGGGGCCAGAGCCCCCCCcgcacattaaagaggaacaggaggaactctggaccagtcaggagggagagcagctccGCGGGCCGGAGGAGGCTGATGCCAAGTTCCCGTTCGCTTCTGTCACGGTGAAGAGCGAAGAAGATTCTCAGCGCTCGCAGCTTCACGAAAACGAAACTGAGGCTACCAGAGAGGCAGAGCATTCGAAAACCGAAGCTGACGGAGAGGACTGCGGAGGACCGGAACCAGCCGGGAACTCCGATCCAGAGAGACATCCAGAACCAGATGCTCATGACGACAGTCCACGCTCCTCTGAACCTGAGAATGATGACAGTAGAGATTGGGAGGAAACTGGGGCACCTCAGTCAGGTTCAAACCCTCTGCAAAACATCAAAGTCCTCGCGATTGACGTGACTAAAGGAAAAACCAAATTTAGTTGCTCCATTTGTCGTAAAAGATTTACCTGGAAGAACTCCTTAGTGGCTCACATGAAACGTCATTCAGAAGGGAAGtgtttcagctgctcagtttgcAAAACAATGTTCAGTAACAACAACCTTCTGCTGAAACACATGACCGTCCATACTGGGGAAAAACCATTCGGTTGTCCAGTATGCCGTAAAAGATTCGCTGACCGCAGCAATCTGAAAAGACACCTGATTCTCCACACCGGAGAGCGGCCGTTTCAGTGTCCAGTTTGCAGTAAACGATTTGCGCAAAAGGCCCACCTGGAACAACACGCGGCTCTCCACACGCGGGAGAAACACTTCACTTGTTCAGTTTGCAGTAAAAGATTCTCGAACCACAGCAACCTGAGACGCCACTTGGCGCTCCACACCGGGGAGAAACCGTTCAGCTGTCCAGTGTGCGGCAAAACCTTCGCACAACGGGGACACCTGAAACAGCACTTGCCTGTCCACACGAGGGAGAAACCGTTCAGTTGTTCGGTTTGCAGCAAAACGTTCACGCAGAAGCATCACGTGACGCAGCACTTGGCCGTCCACACGGGGGACAAACCGTTCAGTTGTCCAGTCTGCAGTAAAACATTCACAAAAAAGCAATATCTCGAAAAGCACAAGTGTGTTGGGGAGAGCAGCAGGAAGAAGTGAAGCTGCAGAGACGCTTGTTGAGAcattccccctcctcccccccccgaCGATTTTTACAGTGGCTTAGCTCCGCCCAtagcgattgtgattggtttaaagaaatgccaatgaaaacagagcacgtttttctcccaatcCCTTAATGCTGTGTGGACCTGAGGTGAAAAAAGTACTAAActattttactcaagtaaaagtaccaatactttgatgacaaattactcaagtaaaagtaacaagtagttcatttaaaatgtactttaagtaaaagttacttagtttcatttaaaaaacaacaactgcaaAACGGGAACGACAAGGGGTCATGAATCCCAAACTAtttagtttttaattaaagatctatacaaatgtatacacatgtaGCAGCTAGGTTCTACACACCTAAGTAGCCTGTATGATCTATTTAGatgtatgtgaattaatttaCGCTACATACGCTGTCCTACAGGTTGCTAGTGCTAGACAAAAATTAGCAATGCCCCGAAGCATGTTGCTTTGCTAATTGGAAATTTGCTATTAGTCAATACCAATGCACAAATACTTTCCAAAACATGCTTCCGCAGATTAGATGTGGAGTTATTGAATGCTGCCCAGTTCAGTCACCTTCGGCAAGGCACATCTGGCATCACACTGTGATACTATTGGCCCTCTTGAATTCAAATGAATGAATTCAAATGTGGCCAAGGATTTTTATCGTTTTGGGCCGCAGAATTCGACGTTTCAGCTAGCATTTCTACTGACACGGCCTCTGAACCGTCGTCGCTCGCCTGATCCACCTCCATCTCGTTCTCAGTCTCTTACAGAAAGACTTGGCgcctggtaggcagcctagatgCTGATCATTCGTCACTGTCGTGGTTCCGGGCgcgatttttgttttcttcgtTTCggtcaaatttttattttttattttttactccgtaacggatgggatttgtaatgAAGCGAAATGCAATACGTATTCAAGTACGTTTTAAATTACCGATTTAAAAAACTACttcaatacaaaatacacaacaaaactactcacTACAGTAaagtgagtaaatgtattttgtttctttccacctctggtctggactagccagaccctcctccgctccccAGCGTGTGGGATGGTCTGGCGAGGCGAGACTGGGGCAACACCAGTTCAACACTGATCAACTACAAATGGTCAGACTTGAGGCAGATGCAGACTCCAAAATAAGACGTCGGAAGAGAAAAGCTACACAACCATTTAAGCTCTGCTTTTATTTGACTAcgtgttattttttttcgttTTCTGGGCACTGTTGTTTTTGGTATTCCATCTAACTTGTAAagtcatgttgttgtttttaatctgCTGCCCATCAGGACTCCCTGGCAGAAGAGATGCTGTGTCTCAAGTAGGGTTGCCAAATTCCgggaattttcaaagttggaaactttccatgggaattaataggaataaactgaatattttattataatactGTTAGTCTATAAAAGGGAACTTAAATGTAGTTCGAAAAAAACCACCTTACAGCATAAtcttggttaaaacaacctgatttaatgcaacttcagttgaatgtcctccctatattcgtcaatgacatgcagtaaacagcataggctactacatactggccaacatttagtttttaaaatacgggaggttttttttagggggggggatacataacccattgctattaacctatgtgtgttaattgtatagcccactTGTTCTTGATAGGGTAGAAACAATAGACAACACTGATGTTGCCTTAACACGcatataaccataaccatagtaAATCATATGTTAAGCTAAAGGTCAACGTTTTGGGCTACTACTTAGCCTACTCCAGGGCTATTGAGGCCACACCCACTGCACAGATCATTTCTAGAATCCAACATTCTACAGCTGATTGAAGCTGATTGAAGACAGTACTGCATTTTAGCCCATGGACTACATTCCATCCAAATTCCCATAatttccattaattcccatgaaagtttccaaattggaatgtttccaaaattccccagctaaactttccatggaaagcaatattaaaaatatccagtttattgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185554 lncRNA upstream 96902 31004254 ~ 31006914 (+) True G137805
TU185551 lncRNA upstream 105272 30998286 ~ 30998544 (+) True G137802
TU185525 lncRNA upstream 161975 30941361 ~ 30941841 (+) True G137777
TU185522 lncRNA upstream 163831 30937025 ~ 30939985 (+) True G137775
TU185520 lncRNA upstream 184065 30916067 ~ 30919751 (+) True G137774
TU185582 lncRNA downstream 159669 31270094 ~ 31270497 (+) True G137831
TU185583 lncRNA downstream 167720 31278145 ~ 31278565 (+) True G137832
TU185585 lncRNA downstream 196402 31306827 ~ 31307041 (+) True G137834
TU185587 lncRNA downstream 379435 31489860 ~ 31490059 (+) True G137836
TU185642 lncRNA downstream 507170 31617595 ~ 31621919 (+) True LOC120570800
XM_039820007.1 mRNA upstream 467843 30591473 ~ 30635973 (+) True tmem65
XM_039820702.1 mRNA upstream 515880 30571463 ~ 30587936 (+) True rnf139
XM_039820929.1 mRNA upstream 534291 30555292 ~ 30569525 (+) True tatdn1
XM_039819221.1 mRNA upstream 554989 30536352 ~ 30548827 (+) False LOC120570731
XM_039819220.1 mRNA upstream 554989 30536358 ~ 30548827 (+) True LOC120570731
XM_039820534.1 mRNA downstream 9364 31119789 ~ 31166090 (+) True si:ch211-264f5.6
XM_039820749.1 mRNA downstream 357700 31468125 ~ 31471167 (+) True LOC120571681
XM_039819350.1 mRNA downstream 688683 31799108 ~ 31801682 (+) True LOC120570797
XM_039820763.1 mRNA downstream 750520 31860945 ~ 31870388 (+) True LOC120571697
XM_039819454.1 mRNA downstream 771457 31881882 ~ 31917843 (+) True vps52
TU185519 other upstream 166959 30921166 ~ 30936857 (+) True G137773
TU185466 other upstream 356808 30745785 ~ 30747008 (+) False G137743
TU185469 other upstream 356808 30745785 ~ 30747008 (+) False G137743
unassigned_transcript_626 other upstream 585926 30516558 ~ 30517890 (+) True LOC120570927
TU185363 other upstream 586000 30516583 ~ 30517816 (+) False LOC120570927
TU185622 other downstream 507170 31617595 ~ 31683452 (+) False LOC120570800
TU185625 other downstream 507170 31617595 ~ 31683452 (+) False LOC120570800
TU185629 other downstream 507170 31617595 ~ 31683452 (+) False LOC120570800
TU185635 other downstream 507170 31617595 ~ 31642463 (+) False LOC120570800
XR_005641241.1 other downstream 884576 31995001 ~ 32003680 (+) True LOC120571558

Expression Profile