RNA id: TU185522


Basic Information

Item Value
RNA id TU185522
length 2933
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G137775
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 30937025 ~ 30939985 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATATTATAGTTGATTTCCTTCTGAAGGctgttttatttgaaaatgtttaaagcgcccatattatgctcattatcaggttcataattgtattttgaggttgtaccagaataggtttacatggtttaatttagaaaaaaacaccatattttttgttgtactgcacattgctgcagctcctcttttcaccctgtgtgttcaggtctctgtttcagctacagagtgagacatctcactgctgtaacatctttgttggcagtcgcacatgcgcagtagctaggtaaggatcatatccgctagctagctgtttaaacaacttcggtcagttacaaggcaggattagccgggagacttcttctaaacgagggcgcgcttccaactttgcgttgaatacctgcagaacagggacatggaagtagttcttttgtagattatggtgaactagtgtgtgttgtagcaatgctttgccattgagaacgagctagcatgctagcgctagcatgctacggttagccccTTCGTTTcagctagtgacgtagaaagccctgcagattttgaacatcTCACTCGGAGACTAAaggaaggttaaaaaaaaattctcaagtttgtatgcgtgtggaagcaccagagacacaaaatttttttttttttcataatatgagcactttaagaggTTTGAAAAgatgaaggttttttttttcttgtttatttaTCTTGGTAATAATCTCCCGACCCTTGAAGCGGTTCCGACCGCAAGTATTAGGATTAGCTGTTGAGTGTTTCGGGTGAATGGGTGTAAAAGAGAGGGGCTAAATGCCGTGTTTCGACTACATGATAAGTGTCTACTTAATATtataatccaaaccacgatgtTTTTCCTTCACtggtcgttttggtgcctaaacttaacggtCGCCACCGCATGACCTGACGTGCATATACCCGGCTCGCTGCCACCCTTTAGTCAGCCGAACTCAACTAGCGATGGCCGCAGATACGAGTGAACgctcacggagctctgtagccggcaTCACCTGATCGCCTAATTTTGTAGGATACCATATGAATTCATAGCCTGAATAATAGCCATAGCCAGATTCAAGTCAGAATAggagtctgatgctgctccattgggctgtgattatggggcgtgttccaaccgaaaaccaggaaagaaaatgcctctgcactcaattggatagacctacaaccaatcagagcaacggatagacctacaaccaatcagagcaacggatagacctacaaccaatcagagcaacggatagacctacaaccaataagagcaacggatagacctacaaccaatcagagcaacggatagacctacaaccaataagagcaacggatagacctacaaccaatcagagcaacggagtatGTGATGTATGCGCCCCATGTTCTTAGCGACCATCGGTGCCAGctgataaattaaacttttgccgaatCCAGTAGGAAGGACGGCAAAAACATCTTCCCGATCGACAAATGCCTCGATGGCGGTTCTCGggtcctcttttaaaatgaacgcgctgtcgatatcttctgtatCAGACGCGATggaggaatctacacatctcatttctccagcggcagccgtctctgttgtaaacaaattcaacccaagcgctctttggcgACGTTGTTGAttatgttactgttgatcatctgtccaagcccgccctgacaatttgattggtccgaacagctctggttcgagcatagcTGCTCCACAACGGACCAAGTCCAGACctgaacttcccgacctcaaagattgtgggcggggctaagttcggctggcatccagccTAATGAATTCATACTATATCGtacaaacccgttcatgagaatgcgttgaggTAAAAGTAGTGTTTTGTAACCTCTCCCAACTCATGTGGGGTGAACTCCAGGTTTAATTGGTTAGAACACTTGTCGCAACTTGACTTGGCGTCTCCTTCTaattacatgacattacatgacattacatgTCATCTAGCTgccgcttttatccaaagcgacttacaattgctatatatgtcagaggtcacacgcctctggagcaactaggggttaaatatcttgctcagggacacattggttgatgtatcacagtggaatgtgtcatatccactgcgccatcaccacccaacaTCTTTGAAAAGATGACAACATTTGCACTTCTTgaggttaacccttgtgtggtgttcatatttttgtcccacagccaatgttccccggggtctggtggacccaccacattattaggcttttaaatcgatacagcataattccttatatttttatgttttatttctactttaattctctcacattattgaaagacagtttatctcagtttctgcttaactgctgagacgtccagtctggaacataatgtgagcactgtttgtctgaaccgataggggctacaaggtcaccctaaaacgatctctagttttcccatgccagttaagatggaactgggggggtgaaagtcgtacagggaggaggaggcgaaatggctccaagatgtctcttgtatttcttgaTTGTcgtcatgtgtatcagattgtctgtaagaattgtagcgtcataataagccaagtgcgtgtgtgctgtcactctgaagatgcatataagcctggtgttcttgttcactcatttgaggaactgactccacactgggctgcggccttttgtgaaatcatgttgctcctatttgcaaatatatctttaataaaatacaaaaacccaacttggttctagtctcagactgtcttatttgtttcattatactaaactttgaaaacttcccccctgctgcaaaggaaacttccactacaagatcacatttatgatcatatgatcatttttgatcattattggtgcttatttcttagaacttaatcagaacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185520 lncRNA upstream 17274 30916067 ~ 30919751 (+) True G137774
TU185512 lncRNA upstream 70905 30865109 ~ 30866120 (+) True G137766
TU185511 lncRNA upstream 72028 30864724 ~ 30864997 (+) True G137765
TU185475 lncRNA upstream 190017 30745785 ~ 30747008 (+) False G137743
TU185525 lncRNA downstream 1376 30941361 ~ 30941841 (+) True G137777
TU185551 lncRNA downstream 58301 30998286 ~ 30998544 (+) True G137802
TU185554 lncRNA downstream 64269 31004254 ~ 31006914 (+) True G137805
TU185582 lncRNA downstream 330109 31270094 ~ 31270497 (+) True G137831
TU185583 lncRNA downstream 338160 31278145 ~ 31278565 (+) True G137832
XM_039820007.1 mRNA upstream 301052 30591473 ~ 30635973 (+) True tmem65
XM_039820702.1 mRNA upstream 349089 30571463 ~ 30587936 (+) True rnf139
XM_039820929.1 mRNA upstream 367500 30555292 ~ 30569525 (+) True tatdn1
XM_039819221.1 mRNA upstream 388198 30536352 ~ 30548827 (+) False LOC120570731
XM_039820533.1 mRNA downstream 163831 31103816 ~ 31110425 (+) True LOC120571534
XM_039820534.1 mRNA downstream 179804 31119789 ~ 31166090 (+) True si:ch211-264f5.6
XM_039820749.1 mRNA downstream 528140 31468125 ~ 31471167 (+) True LOC120571681
XM_039819350.1 mRNA downstream 859123 31799108 ~ 31801682 (+) True LOC120570797
XM_039820763.1 mRNA downstream 920960 31860945 ~ 31870388 (+) True LOC120571697
TU185519 other upstream 168 30921166 ~ 30936857 (+) True G137773
TU185466 other upstream 190017 30745785 ~ 30747008 (+) False G137743
TU185469 other upstream 190017 30745785 ~ 30747008 (+) False G137743
unassigned_transcript_626 other upstream 419135 30516558 ~ 30517890 (+) True LOC120570927
TU185363 other upstream 419209 30516583 ~ 30517816 (+) False LOC120570927
TU185622 other downstream 677610 31617595 ~ 31683452 (+) False LOC120570800
TU185625 other downstream 677610 31617595 ~ 31683452 (+) False LOC120570800
TU185629 other downstream 677610 31617595 ~ 31683452 (+) False LOC120570800
TU185635 other downstream 677610 31617595 ~ 31642463 (+) False LOC120570800
XR_005641241.1 other downstream 1055016 31995001 ~ 32003680 (+) True LOC120571558

Expression Profile