RNA id: XM_039819940.1


Basic Information

Item Value
RNA id XM_039819940.1
length 4513
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC120571183
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 29818666 ~ 29832361 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGGATACCCTCTGGGTTCTGATGGGTGGTTAGAAGCCGAAGTTAAAGGGATTACTCTTGGCTGTCGAACGCAGGAGGTTCTTGGAGTCAAGAGGGAGCACCTGACCAGCGGTGGCCTAACATCTCTTCCCAGAGACAGCAGGTTCTATCAAGATACATCAGCCCAGCTTAACTCGCCATGGAGCCAATGGCACTGTTGTATTGAAGCAACAAACAGCTGAAGACTTCAGCAGCACCCTTTGTGTGCTTCGGGAATACCGCCTTGGATTTTGTACTGCTTGTCGTTCAAAAGGACTTTTTGTGGTCTGGGAGGAGTTTCCAGCTGCAATTTTATGGTTGACATGCGTTACCCCACCACCTTTCAATCCGGCACTTATAACCTCTATTCATGGTGTTCGTCGAAACAAAGCTAAGGCCTAGGAGGACTGTCATTTGTCGAGGAATAACTTGGACTCAGGCCAAACATGGCCAGAGACGTCAGTCCTCTGAGCCTCATGCCTCTGTCTGCAAAACACCACCAATGGGTTGGAGCCTCTCTGGGGTCTATCCTCCCCTTCTCCCCCTTACGTTCTCTAATTTTTTACTACTTCCtgtcatgtgcagcagcagcaggaagttTGCCTGGCATAGAATATGACTATGGCATTAGCCCTAAATTTGTTTGCACCccaattcccccagaagcagaccCCAGCTGCTATTCGCCACCCAGTGTGCCCCACGGACCGAGCAGTAACGGTCACACAAATGGTCACAACGGCAGTAGCCGGCGAGGCATGATGTCCGAAGAGGCCAAAGCCACCATCTTGCACCTGCGCGAGAGCCTTGTGAGGCAAAAGGAGACCATCCTGGACCAGCGGGAGACCATCAGGGAGCTGACCGCCAAGCTCACCTTGTGCGAGGGCTTCGGTGGCGGTCACCACGGCACCAACCACCACGACAACCACCACGACAACCATCACGATACCCATCACGATACCCATCACGACAATCATCACGACGGCCACCGCGACGACCACCACGGGCCGCACAGCAGCCACCACACGCCCGCGTCGTCGCACCACGGTTCTTCGCCGTATCACAGCAGCGATCACCACTACTCCCACGGCGGCCACAGGTCCGACCCCCACCACAGGAAGCCCTCGACATACGGAAAGCACAGCTCCTTCTCCCCTGAACAGACGGGCAAAACACTGCAGACACTGAAGGAGAGGCTCGAGAACTTGCAGGCCAGGAACTCCTCCAGCTCGTACTCCAGCTCGCTGAGAGAACTCCTCCAGCGGAAGATCACCGCCCTGGAGGAGCAGCTGCACAGCTACTACAGAGATACCCGTGACTACGGTCACCGGGACGACCACCATGACGATCACCACAACGTTCACCCCGACGACCACCACGGCAGCAGCCACCCTGACGACCATCACGACGACCACCACGACGACCACCGTGGTACCGGTCACCGGGACGACCACCACGACAGCCATCACGGCAGCCACCACGGCAGCAGCCACAGGAACAACCACCGCGGCGGTTACCATAATCGCCACCACGACCACCACTACGACTGGCACAACAGCCGGCAACGTGGTCACTATGGCAACCATCACAGCACCCACCATTACGATGACCACCACCACGACGATCACCACGACTATCACCCTGAGGATCACCACGACGATCACCACGACTATCACCACGGGCCTGGACACCACGATGACCACCATGAGGATCACCATGACAATCACCACGGCAACGACCACCATGAAAGCCGCCACGGGATCGATCACAGCCCACGGCGGGTGCTTTCCAGCGGCAAAGAGACGAATCTGCGCGGCGTGGGGCACGGCAAGCTGGAAACAGTGCTCAGCCAGCTGCACCATGGCAACACTGACTCTGGAGTCCACAAGAAGTTGAAGAGTCCCAACGCTTTCCTGCTCGACTTCCCCATGAAGACCAATTACATGTACGCCAGGATGAAGCGGTCAGTGGTCAACGAAATCTTCGCAATGACCATCTGCCTGCGGCTGAAGGCCGGAGCAGGTCCTGGCCTCGGTACTCCCTTCTCCTACGCTGTACCTGGACAAGCCAATGAGCTGGTGCTCATCGAATGGGGCAGCAACCCAATGGAGCTGCTAATCAACGACAAGGCGGTGGCAATGCCAATAACCATGACAGATGGGAAGTGGCATCATGTGTGTATGACGTGGACGACACGAGACGGTGTCTGGGAGGCCTACCAGGACGGGGTGAAGAAAGGCTCGGGACAAAACCTGTCAGCCTGGCACCCCATTAAACCAGGAGGGACCTTCATCCTGGGCCAGGAGCAGGACACAGTGGGAGGCCGCTTCGACGTCACTCAGTCCTTCATGGGAGAGTTGTCTGATCTCCAGTTCTGGTCCAGAGTCCTGACGCCCAACGAGATCTACAGCCAGGCCACCTGCGGAGGCCACCTCATTGGTGATGTCATGTCCTGGTTGGAGGAATCAGTGGAGCTCCACGGAGGGCTCACCGAGGTGCCCTTTGACCCCTGCCACTAAGGACTGACACTGGACCCCAACACCGAGAGCCGTAGCATCATCATCCCAACATATTTCAATTACATGCCCCCCCCGTCAAAAATAGTTGGAGAGTGGGAAAATGCTATTTTGTCACGGATCAAAGATGGGGGAATGATTAATTTCATTGCTTGCTCAGGTTGCAAGCTCAGCCATGGGCAACAGGCAGAGCAGGAGGAGTTCTTTTgctttttctatatatttttgcCATTCCTGTCTGATCTTTCTGCCTTCTCCACCTACACGCTCACTTCTTCGCTCTGACGCTCTCAGCAGGATGACTTTGAAGGCTCCAAAGAGCGCAGGGCTTTGGATTTACTGGCTGTGTGGTCATGACTATGGCTGAATCTCAGGGATCCAACACACATAATAGGATTTCATTCCATCGGAACAGGTCCAAAGGTTGCTTGTTGCCATTAGCTCCCCATGCACTAGCTTGTTTTGTTTGGTATGTGAGCAACATGAGGTGAAAGAGTGGTGAAAAGCCCCAGAATACAAATGAAGCCGCACTGAGACCTGAACCGTGATGATTCATCCATGTTGCTAGAGTACAGACAATCGAATATCTGCTCATTGTTTTGTCGAGACAAAGGAATAATGTTGTTTCGGGGTGTTTTTTACAATGTTGGTCAAATTTGGCACAAGCTACTGTTGTTGATTTTGCACGTTGAGATTGTTGACTGTTTTGTACTAGTATTTCATATTGAAAACTCTACTTTTTTTGTAGACAGAAAACTGCTTTCGTGGCATTCAGAAAAACAAACTGTATCCATGTATGATGTGTTCTTTATAACCGTGAGATTACATTTTGTCGATTCAGGAATGAGAATGacgttttgtttctttgttcaaAAGTCGGCCGTTGCATAAGAGCACCGCGGGCGGCTCAATGTCAGACATGACAGGCCACCTGGCTCCACGGTCGCGGTGTTAACCGTCCCTCAACATGTCACCGCGGTAATGCTTATGTCTCCTCGGCAACCGGTGGCTTACAGCTGGATTTACCTATGGACAACTGATCTGATCCTGCCTATTTCGGACCAGCTCAAAACCCATGGCAGAgtcagacacactcacacacactctgcataCACTTAGAGAAGATAAAGAGGTGAAAGGAGACTTTGTTGATCTCTGTTTGTAGCGGCACCTTTACGTTTTTTTAAGAAGAGGCTTTTTGTACATGTAAATTACATCAGATAGTCTGTTTTTAATTACTAAAAACATGTATTGTGGCATTTCTCACAttgtaaataagtaaataagtacATAGCACTTTCTCAACCCAATGTTAACCCTGAGGTTGTTTAAGAGCAACTTTTTGGAAGTAAACTGTTTATTATTCGTTTATCATAACCCTATCCCCTCTGAGTTAAACTCAAAGGGGTTGAACTCTTTTTATTGATAGTCAAAACAAAATGGGGTATTttgttgttgccatggtaataGAATCTCTCagcatcaggaccacatcatcgcACTACAGCTGTGAATATCTACAAAATGTTTCTTCGACTGTAACGCCAAGACGAGCAGCATTTTTAAAACATGCTCCTGTTTTCCTCTCATGGTAGTGGGCCAAATGCATGTGACATTTGTTTCATATGTTGCTTCTTCTGTCTAATGTTCTATAGACATCAGTTTAAACACCCCCTCCTTCGACCGAACTGTGTAGTGTTAggctgaatgaaaaaataacttGCTTATTCTCGCCTTTGGTGTACACTTTAATgtttattagttgttttttttatgtttattcttGTCTCTTTGGCTGTAAATATTCAAAGTATTGCAGTGTGTTCAGGCAACAGTCCCTCCCTCATGTGTAAGCCAAAACTATAAACTGAATTGTAAAActtgaaagaggaagaaaatccACTGTAAATGCTGTCAAATATTTGTAAAGATGTGAGGATTTTGattaaaactatttaaaatatgttATGAATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185100 lncRNA upstream 22174 29795932 ~ 29796492 (+) True G137485
XR_005641340.1 lncRNA upstream 476336 29340018 ~ 29342330 (+) True LOC120572018
TU185042 lncRNA upstream 480037 29334778 ~ 29338629 (+) True LOC120572017
XR_005641339.1 lncRNA upstream 480044 29334788 ~ 29338622 (+) False LOC120572017
TU184984 lncRNA upstream 537948 29279889 ~ 29280718 (+) True G137391
TU185117 lncRNA downstream 2187 29834548 ~ 29838044 (+) False LOC120571184
TU185138 lncRNA downstream 48963 29881324 ~ 29887146 (+) True LOC120571186
XR_005641144.1 lncRNA downstream 81634 29913995 ~ 29928513 (+) True LOC120570849
TU185150 lncRNA downstream 84356 29916717 ~ 29916921 (+) True G137526
TU185154 lncRNA downstream 89207 29921568 ~ 29922337 (+) True G137527
XM_039819375.1 mRNA upstream 62759 29732913 ~ 29755907 (+) False LOC120570814
XM_039819377.1 mRNA upstream 62759 29732925 ~ 29755907 (+) False LOC120570814
XM_039819376.1 mRNA upstream 62759 29733053 ~ 29755907 (+) True LOC120570814
XM_039820964.1 mRNA upstream 99331 29670607 ~ 29719335 (+) True cacng7a
XM_039820656.1 mRNA upstream 207170 29434728 ~ 29611496 (+) True grin2da
XM_039819941.1 mRNA downstream 1082 29833443 ~ 29847925 (+) True LOC120571184
XM_039819944.1 mRNA downstream 1089 29833450 ~ 29847925 (+) False LOC120571184
XM_039819942.1 mRNA downstream 2164 29834525 ~ 29847925 (+) False LOC120571184
XM_039819943.1 mRNA downstream 3864 29836225 ~ 29847925 (+) False LOC120571184
XM_039819945.1 mRNA downstream 17442 29849803 ~ 29855470 (+) True LOC120571185
XR_005641221.1 other upstream 757453 29020235 ~ 29061213 (+) False LOC120571364
TU184752 other upstream 951990 28864142 ~ 28866676 (+) True G137239
TU184767 other upstream 970527 28847232 ~ 28848139 (+) False LOC120570924
TU184788 other upstream 1031849 28775270 ~ 28786817 (+) False LOC120571342
TU184508 other upstream 1286447 28531031 ~ 28532219 (+) False tmem238a
TU185114 other downstream 7263 29839624 ~ 29848210 (+) False LOC120571184
TU185133 other downstream 17506 29849867 ~ 29855466 (+) False LOC120571185
TU185192 other downstream 319258 30151619 ~ 30155115 (+) True G137551
unassigned_transcript_626 other downstream 684197 30516558 ~ 30517890 (+) True LOC120570927
TU185363 other downstream 684222 30516583 ~ 30517816 (+) False LOC120570927

Expression Profile